C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NCK-associated protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000361354 NCKAP1-001 ENSG00000061676 9606 - 2:182909115-183038472 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonHeartKidneyLiverLungMuscleOvaryENST00000361354
Transcript ID Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary
ENST00000361354 0.499±0.00 0.797±0.00 0.679±0.00 0.436±0.00 0.993±0.00 1.665±0.00 0.984±0.00 0.348±0.00 1.453±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000YU CIL_0000YU_0001 CGP 2:182833275-183038858
CIL_0000Q8 CIL_0000Q8_0001 CGP 2:182909115-183100005

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005829 TAS cytosol
GO:0005886 IEA plasma membrane
GO:0005925 IDA focal adhesion
GO:0006915 TAS apoptotic process
GO:0007417 TAS central nervous system development
GO:0010592 IMP positive regulation of lamellipodium assembly
GO:0016021 IEA integral component of membrane
GO:0016601 IDA Rac protein signal transduction
GO:0031209 IDA SCAR complex
GO:0032403 IDA protein complex binding
GO:0038096 TAS Fc-gamma receptor signaling pathway involved in phagocytosis
GO:0045087 TAS innate immune response
GO:0048365 IDA Rac GTPase binding
GO:0070062 IDA extracellular vesicular exosome
GO:2000601 IDA positive regulation of Arp2/3 complex-mediated actin nucleation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028386 Nckap1-001 protein_coding Mus_musculus 0 5256
ENSMUST00000111760 Nckap1-002 protein_coding Mus_musculus 0 5173
ENSDART00000132696 nckap1-001 protein_coding Danio_rerio 0 2132
ENSMUST00000131872 Nckap1-004 processed_transcript Mus_musculus 0 852
ENSMUST00000154793 Nckap1-003 processed_transcript Mus_musculus 0 597
ENSMUST00000134587 Nckap1-005 processed_transcript Mus_musculus 0 431
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.00003 58

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