C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 44 (choline transporter), member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000070214 SLC44A1 9606 + 9:105244622-105439171 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000374720 SLC44A1-003 105244622-105397346 protein_coding
  ENST00000374723 SLC44A1-001 105244622-105397346 protein_coding
  ENST00000374724 SLC44A1-004 105244622-105439171 protein_coding
  ENST00000436716 SLC44A1-006 105386688-105396018 processed_transcript
  ENST00000470972 SLC44A1-002 105244622-105397346 nonsense_mediated_decay
  ENST00000607692 SLC44A1-007 105294666-105335587 processed_transcript
  ENST00000607701 SLC44A1-005 105355917-105357243 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000374720ENST00000374723ENST00000374724ENST00000470972
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000374720 6.095±0.00 3.331±0.00 1.400±0.00 8.082±2.52 3.678±0.76 7.252±0.63 1.251±0.36 3.826±1.19 3.935±1.34 4.505±0.56 0.568±0.00 5.851±2.06 4.903±0.41 3.209±2.69
ENST00000374723 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.884±0.00 N/A 0.213±0.00
ENST00000374724 5.529±0.00 N/A 2.083±0.00 13.390±0.00 5.862±1.90 8.087±0.00 2.798±0.72 6.826±0.77 4.909±0.00 6.517±0.82 1.143±0.32 6.494±2.71 5.292±0.00 1.454±0.00
ENST00000470972 N/A N/A N/A N/A 0.462±0.00 N/A N/A N/A N/A 1.886±0.00 0.252±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00022C CIL_00022C_0002 CGP 9:104781002-105439171
CIL_00033S CIL_00033S_0001 CGP 9:105244622-105552433

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005741 IEA mitochondrial outer membrane
GO:0005886 TAS plasma membrane
GO:0006644 TAS phospholipid metabolic process
GO:0006656 TAS phosphatidylcholine biosynthetic process
GO:0015220 TAS choline transmembrane transporter activity
GO:0015871 TAS choline transport
GO:0016020 IDA membrane
GO:0016021 TAS integral component of membrane
GO:0044281 TAS small molecule metabolic process
GO:0046474 TAS glycerophospholipid biosynthetic process
GO:0055085 TAS transmembrane transport
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015946 slc44a1a solute carrier family 44, member 1a protein_coding Danio_rerio
ENSDARG00000087275 SLC44A1 (2 of 3) solute carrier family 44 (choline transporter), member 1 protein_coding Danio_rerio
ENSDARG00000090982 slc44a1b solute carrier family 44, member 1b protein_coding Danio_rerio
ENSMUSG00000028412 Slc44a1 solute carrier family 44, member 1 protein_coding Mus_musculus

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