C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00022C_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000074635-ENSDARG00000015946 CGP 7955 1:53057931-53147096
GeneTranscriptPositionBiotype
ENSDARG00000015946 (slc44a1a)
solute carrier family 44, member 1a 		ENSDART00000011725 (slc44a1a-201) 53128315-53147096 protein_coding
ENSDART00000134658 (slc44a1a-001) 53128030-53146349 protein_coding
CIL_00022C_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000165029-ENSG00000070214 CGP 9606 9:104781002-105439171
GeneTranscriptPositionBiotype
ENSG00000070214 (SLC44A1)
solute carrier family 44 (choline transporter), member 1 		ENST00000374720 (SLC44A1-003) 105244622-105397346 protein_coding
ENST00000374723 (SLC44A1-001) 105244622-105397346 protein_coding
ENST00000374724 (SLC44A1-004) 105244622-105439171 protein_coding
ENST00000436716 (SLC44A1-006) 105386688-105396018 processed_transcript
ENST00000470972 (SLC44A1-002) 105244622-105397346 nonsense_mediated_decay
ENST00000607692 (SLC44A1-007) 105294666-105335587 processed_transcript
ENST00000607701 (SLC44A1-005) 105355917-105357243 retained_intron
ENSG00000226334 (RP11-217B7.2)
 ENST00000435915 (RP11-217B7.2-001) 104927553-104928892 antisense
ENSG00000230013 (RP11-217B7.3)
 ENST00000457720 (RP11-217B7.3-001) 104990796-104991781 lincRNA
ENSG00000238208 (RP11-112N13.1)
 ENST00000423731 (RP11-112N13.1-001) 105182480-105186757 processed_pseudogene
CIL_00022C_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000015243-ENSMUSG00000028412 CGP 10090 4:53030787-53622478
GeneTranscriptPositionBiotype
ENSMUSG00000015243 (Abca1)
ATP-binding cassette, sub-family A (ABC1), member 1 		ENSMUST00000030010 (Abca1-001) 53030787-53159895 protein_coding
ENSMUST00000149127 (Abca1-002) 53035488-53040926 processed_transcript
ENSMUSG00000028412 (Slc44a1)
solute carrier family 44, member 1 		ENSMUST00000102911 (Slc44a1-001) 53440413-53622478 protein_coding
ENSMUST00000107645 (Slc44a1-004) 53535612-53621798 protein_coding
ENSMUST00000107646 (Slc44a1-003) 53440413-53550200 protein_coding
ENSMUST00000107647 (Slc44a1-005) 53440684-53563450 protein_coding
ENSMUST00000107651 (Slc44a1-006) 53440671-53567818 protein_coding
ENSMUST00000133582 (Slc44a1-007) 53596105-53621987 processed_transcript
ENSMUST00000136607 (Slc44a1-002) 53440671-53528709 processed_transcript
ENSMUSG00000083735 (Gm12495)
predicted gene 12495 		ENSMUST00000119750 (Gm12495-001) 53308226-53308672 processed_pseudogene
ENSMUSG00000084970 (1700060J05Rik)
RIKEN cDNA 1700060J05 gene 		ENSMUST00000138377 (1700060J05Rik-001) 53562983-53564697 antisense
ENSMUSG00000086267 (Gm12496)
predicted gene 12496 		ENSMUST00000154377 (Gm12496-001) 53401948-53404030 lincRNA
ENSMUSG00000086712 (AI427809)
expressed sequence AI427809 		ENSMUST00000098075 (AI427809-201) 53261893-53262547 lincRNA
ENSMUST00000123044 (AI427809-001) 53262732-53263831 lincRNA
ENSMUST00000123127 (AI427809-002) 53261356-53270232 lincRNA
ENSMUST00000186737 (AI427809-003) 53262455-53265492 lincRNA
ENSMUSG00000086947 (4930522O17Rik)
RIKEN cDNA 4930522O17 gene 		ENSMUST00000155178 (4930522O17Rik-001) 53246196-53251115 antisense
ENSMUSG00000087192 (4930412L05Rik)
RIKEN cDNA 4930412L05 gene 		ENSMUST00000139222 (4930412L05Rik-002) 53214557-53217857 processed_transcript
ENSMUST00000146501 (4930412L05Rik-001) 53205066-53217561 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00022C_0001ENSDARG00000015946ENSDART00000011725ENSDART00000134658CIL_00022C_0002ENSG00000070214ENST00000374720ENST00000374723ENST00000374724ENST00000436716ENST00000470972ENST00000607692ENST00000607701ENSG00000226334ENST00000435915ENSG00000230013ENST00000457720ENSG00000238208ENST00000423731CIL_00022C_0003ENSMUSG00000015243ENSMUST00000030010ENSMUST00000149127ENSMUSG00000028412ENSMUST00000102911ENSMUST00000107645ENSMUST00000107646ENSMUST00000107647ENSMUST00000107651ENSMUST00000133582ENSMUST00000136607ENSMUSG00000083735ENSMUST00000119750ENSMUSG00000084970ENSMUST00000138377ENSMUSG00000086267ENSMUST00000154377ENSMUSG00000086712ENSMUST00000098075ENSMUST00000123044ENSMUST00000123127ENSMUST00000186737ENSMUSG00000086947ENSMUST00000155178ENSMUSG00000087192ENSMUST00000139222ENSMUST00000146501
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00022C_0001ENSDARG00000015946ENSDART00000011725ENSDART00000134658CIL_00022C_0002ENSG00000070214ENST00000374720ENST00000374723ENST00000374724ENST00000470972ENSG00000226334ENST00000435915ENSG00000230013ENST00000457720ENSG00000238208ENST00000423731CIL_00022C_0003ENSMUSG00000015243ENSMUST00000030010ENSMUSG00000028412ENSMUST00000102911ENSMUST00000107646ENSMUST00000107647ENSMUST00000107651ENSMUSG00000083735ENSMUST00000119750ENSMUSG00000084970ENSMUST00000138377ENSMUSG00000086267ENSMUST00000154377ENSMUSG00000086712ENSMUST00000098075ENSMUST00000123044ENSMUST00000123127ENSMUST00000186737ENSMUSG00000086947ENSMUST00000155178ENSMUSG00000087192ENSMUST00000139222ENSMUST00000146501
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000015946 ENSDART00000011725 N/A N/A N/A 0.978±0.00 N/A N/A 2.259±0.00 0.306±0.00 0.220±0.00 N/A 0.159±0.00 N/A N/A N/A
ENSDART00000134658 N/A N/A N/A 0.347±0.00 N/A N/A 2.012±0.00 N/A N/A N/A 0.902±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000070214 ENST00000374720 6.095±0.00 3.331±0.00 1.400±0.00 8.082±2.52 3.678±0.76 7.252±0.63 1.251±0.36 3.826±1.19 3.935±1.34 4.505±0.56 0.568±0.00 5.851±2.06 4.903±0.41 3.209±2.69
ENST00000374723 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.884±0.00 N/A 0.213±0.00
ENST00000374724 5.529±0.00 N/A 2.083±0.00 13.390±0.00 5.862±1.90 8.087±0.00 2.798±0.72 6.826±0.77 4.909±0.00 6.517±0.82 1.143±0.32 6.494±2.71 5.292±0.00 1.454±0.00
ENST00000436716 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470972 N/A N/A N/A N/A 0.462±0.00 N/A N/A N/A N/A 1.886±0.00 0.252±0.00 N/A N/A N/A
ENST00000607692 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000607701 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000226334 ENST00000435915 0.625±0.00 0.824±0.00 0.700±0.00 N/A 2.708±1.77 0.497±0.26 0.074±0.00 1.181±0.76 2.124±2.05 0.207±0.00 3.968±0.00 0.232±0.00 0.395±0.29 0.498±0.00
ENSG00000230013 ENST00000457720 0.070±0.00 0.036±0.00 N/A 0.240±0.20 0.038±0.00 N/A 0.068±0.00 N/A N/A 0.064±0.00 N/A 0.121±0.00 0.110±0.00 6.836±5.87
ENSG00000238208 ENST00000423731 0.086±0.00 0.355±0.00 N/A 0.279±0.00 0.147±0.00 0.051±0.04 0.091±0.08 0.200±0.00 0.052±0.00 0.109±0.05 0.052±0.00 0.030±0.01 0.004±0.00 0.136±0.10
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000015243 ENSMUST00000030010 20.903±1.15 23.649±7.41 5.598±1.09 2.543±0.72 14.138±2.48 1.425±0.41 1.819±0.68 4.501±0.87 3.769±1.93 7.618±0.90 1.184±0.23 22.211±6.57 7.658±6.34 3.458±1.82
ENSMUST00000149127 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000028412 ENSMUST00000102911 11.291±1.09 5.621±1.09 10.582±0.17 5.083±3.84 8.933±1.97 16.831±3.08 7.065±1.10 4.924±1.05 2.511±0.80 7.807±1.64 5.811±0.37 8.733±4.07 1.933±0.40 0.810±0.11
ENSMUST00000107645 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000107646 13.772±1.14 2.781±0.00 N/A N/A N/A 82.409±18.22 N/A 4.252±1.21 2.305±0.49 N/A N/A 15.460±5.84 N/A N/A
ENSMUST00000107647 6.173±0.76 N/A N/A N/A 11.554±6.55 N/A 3.914±0.91 N/A N/A 6.191±1.55 N/A 13.360±0.08 N/A N/A
ENSMUST00000107651 12.155±3.62 8.637±1.29 19.410±0.24 4.063±0.68 9.826±2.56 26.527±3.03 3.200±0.20 9.256±1.38 6.135±1.08 18.029±2.43 1.212±0.17 7.996±2.22 6.706±3.05 0.731±0.31
ENSMUST00000133582 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136607 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000083735 ENSMUST00000119750 N/A N/A 0.025±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.195±0.00 N/A
ENSMUSG00000084970 ENSMUST00000138377 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.298±2.11
ENSMUSG00000086267 ENSMUST00000154377 0.147±0.03 0.428±0.00 N/A 0.837±0.77 0.121±0.03 0.179±0.00 N/A 0.088±0.01 0.053±0.03 N/A N/A 0.411±0.45 0.541±0.41 1.671±3.06
ENSMUSG00000086712 ENSMUST00000098075 0.421±0.04 N/A N/A 0.098±0.07 N/A N/A 0.185±0.00 0.313±0.00 0.202±0.13 0.267±0.00 0.172±0.00 0.614±0.14 0.416±0.25 0.140±0.08
ENSMUST00000123044 N/A N/A N/A N/A 2.963±0.00 N/A 0.488±0.00 N/A N/A 0.235±0.00 0.093±0.00 N/A N/A 0.270±0.11
ENSMUST00000123127 N/A 1.457±0.19 0.268±0.00 N/A 1.892±0.35 1.581±0.50 0.101±0.00 0.141±0.00 0.123±0.07 0.412±0.00 0.040±0.01 2.234±1.87 0.223±0.16 0.061±0.05
ENSMUST00000186737 N/A N/A N/A 0.035±0.00 N/A N/A N/A N/A N/A N/A N/A 0.862±0.00 0.452±0.05 N/A
ENSMUSG00000086947 ENSMUST00000155178 N/A N/A N/A N/A N/A N/A 0.124±0.00 N/A N/A N/A N/A 0.124±0.00 N/A 32.560±14.84
ENSMUSG00000087192 ENSMUST00000139222 0.150±0.00 0.376±0.27 N/A N/A 0.122±0.06 N/A N/A 0.058±0.00 0.011±0.00 0.077±0.00 N/A 0.383±0.08 0.195±0.02 0.327±0.00
ENSMUST00000146501 N/A N/A N/A 0.093±0.00 N/A N/A 0.043±0.02 0.040±0.00 0.036±0.02 0.275±0.00 0.035±0.01 0.164±0.03 0.101±0.05 0.194±0.12

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