C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00033S_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000070214-ENSG00000106701 CGP 9606 9:105244622-105552433
GeneTranscriptPositionBiotype
ENSG00000070214 (SLC44A1)
solute carrier family 44 (choline transporter), member 1 		ENST00000374720 (SLC44A1-003) 105244622-105397346 protein_coding
ENST00000374723 (SLC44A1-001) 105244622-105397346 protein_coding
ENST00000374724 (SLC44A1-004) 105244622-105439171 protein_coding
ENST00000436716 (SLC44A1-006) 105386688-105396018 processed_transcript
ENST00000470972 (SLC44A1-002) 105244622-105397346 nonsense_mediated_decay
ENST00000607692 (SLC44A1-007) 105294666-105335587 processed_transcript
ENST00000607701 (SLC44A1-005) 105355917-105357243 retained_intron
ENSG00000106701 (FSD1L)
fibronectin type III and SPRY domain containing 1-like 		ENST00000374707 (FSD1L-001) 105500659-105552433 protein_coding
ENST00000374710 (FSD1L-201) 105448034-105552433 protein_coding
ENST00000394926 (FSD1L-008) 105448123-105546802 protein_coding
ENST00000469022 (FSD1L-003) 105448045-105473320 retained_intron
ENST00000480279 (FSD1L-005) 105448136-105506475 processed_transcript
ENST00000481272 (FSD1L-007) 105448102-105546575 protein_coding
ENST00000484973 (FSD1L-004) 105448123-105546602 protein_coding
ENST00000495708 (FSD1L-009) 105447796-105530963 protein_coding
ENSG00000229419 (RALGAPA1P)
Ral GTPase activating protein, alpha subunit 1 (catalytic) pseudogene 		ENST00000443361 (RALGAPA1P-001) 105520128-105526359 processed_pseudogene
CIL_00033S_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000028412-ENSMUSG00000054752 CGP 10090 4:53440413-53707009
GeneTranscriptPositionBiotype
ENSMUSG00000028412 (Slc44a1)
solute carrier family 44, member 1 		ENSMUST00000102911 (Slc44a1-001) 53440413-53622478 protein_coding
ENSMUST00000107645 (Slc44a1-004) 53535612-53621798 protein_coding
ENSMUST00000107646 (Slc44a1-003) 53440413-53550200 protein_coding
ENSMUST00000107647 (Slc44a1-005) 53440684-53563450 protein_coding
ENSMUST00000107651 (Slc44a1-006) 53440671-53567818 protein_coding
ENSMUST00000133582 (Slc44a1-007) 53596105-53621987 processed_transcript
ENSMUST00000136607 (Slc44a1-002) 53440671-53528709 processed_transcript
ENSMUSG00000081516 (Gm12470)
predicted gene 12470 		ENSMUST00000117239 (Gm12470-001) 53662296-53663344 processed_pseudogene
ENSMUSG00000084970 (1700060J05Rik)
RIKEN cDNA 1700060J05 gene 		ENSMUST00000138377 (1700060J05Rik-001) 53562983-53564697 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00033S_0001ENSG00000070214ENST00000374720ENST00000374723ENST00000374724ENST00000436716ENST00000470972ENST00000607692ENST00000607701ENSG00000106701ENST00000374707ENST00000374710ENST00000394926ENST00000469022ENST00000480279ENST00000481272ENST00000484973ENST00000495708ENSG00000229419ENST00000443361CIL_00033S_0002ENSMUSG00000028412ENSMUST00000102911ENSMUST00000107645ENSMUST00000107646ENSMUST00000107647ENSMUST00000107651ENSMUST00000133582ENSMUST00000136607ENSMUSG00000081516ENSMUST00000117239ENSMUSG00000084970ENSMUST00000138377
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00033S_0001ENSG00000070214ENST00000374720ENST00000374723ENST00000374724ENST00000470972ENSG00000106701ENST00000374707ENST00000374710ENST00000394926ENST00000469022ENST00000481272ENST00000484973ENSG00000229419ENST00000443361CIL_00033S_0002ENSMUSG00000028412ENSMUST00000102911ENSMUST00000107646ENSMUST00000107647ENSMUST00000107651ENSMUSG00000081516ENSMUST00000117239ENSMUSG00000084970ENSMUST00000138377
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000070214 ENST00000374720 6.095±0.00 3.331±0.00 1.400±0.00 8.082±2.52 3.678±0.76 7.252±0.63 1.251±0.36 3.826±1.19 3.935±1.34 4.505±0.56 0.568±0.00 5.851±2.06 4.903±0.41 3.209±2.69
ENST00000374723 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.884±0.00 N/A 0.213±0.00
ENST00000374724 5.529±0.00 N/A 2.083±0.00 13.390±0.00 5.862±1.90 8.087±0.00 2.798±0.72 6.826±0.77 4.909±0.00 6.517±0.82 1.143±0.32 6.494±2.71 5.292±0.00 1.454±0.00
ENST00000436716 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470972 N/A N/A N/A N/A 0.462±0.00 N/A N/A N/A N/A 1.886±0.00 0.252±0.00 N/A N/A N/A
ENST00000607692 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000607701 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000106701 ENST00000374707 0.177±0.00 0.255±0.00 N/A 1.845±0.00 0.257±0.00 N/A 0.351±0.00 0.698±0.00 0.267±0.13 0.380±0.00 0.647±0.00 0.497±0.10 0.056±0.01 0.502±0.00
ENST00000374710 N/A N/A N/A 2.102±0.94 N/A 0.453±0.00 N/A 0.097±0.02 N/A N/A 3.285±0.00 0.261±0.00 N/A 0.614±0.00
ENST00000394926 N/A N/A N/A N/A N/A 0.935±0.00 0.612±0.00 N/A N/A N/A N/A 0.492±0.00 0.027±0.00 1.388±0.00
ENST00000469022 N/A N/A N/A N/A N/A N/A N/A 0.166±0.00 N/A 0.440±0.00 N/A 1.037±0.00 N/A N/A
ENST00000480279 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481272 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.588±0.00 N/A N/A 0.139±0.00 3.290±2.19
ENST00000484973 N/A N/A 0.352±0.00 1.570±0.00 0.825±0.00 N/A 0.337±0.00 N/A N/A 0.488±0.13 0.318±0.00 N/A N/A N/A
ENST00000495708 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000229419 ENST00000443361 0.012±0.00 0.007±0.00 0.296±0.00 0.133±0.13 0.241±0.23 0.605±0.00 0.109±0.00 0.024±0.02 0.191±0.19 0.358±0.00 0.026±0.00 0.129±0.20 N/A 0.064±0.04
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028412 ENSMUST00000102911 11.291±1.09 5.621±1.09 10.582±0.17 5.083±3.84 8.933±1.97 16.831±3.08 7.065±1.10 4.924±1.05 2.511±0.80 7.807±1.64 5.811±0.37 8.733±4.07 1.933±0.40 0.810±0.11
ENSMUST00000107645 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000107646 13.772±1.14 2.781±0.00 N/A N/A N/A 82.409±18.22 N/A 4.252±1.21 2.305±0.49 N/A N/A 15.460±5.84 N/A N/A
ENSMUST00000107647 6.173±0.76 N/A N/A N/A 11.554±6.55 N/A 3.914±0.91 N/A N/A 6.191±1.55 N/A 13.360±0.08 N/A N/A
ENSMUST00000107651 12.155±3.62 8.637±1.29 19.410±0.24 4.063±0.68 9.826±2.56 26.527±3.03 3.200±0.20 9.256±1.38 6.135±1.08 18.029±2.43 1.212±0.17 7.996±2.22 6.706±3.05 0.731±0.31
ENSMUST00000133582 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136607 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000081516 ENSMUST00000117239 0.102±0.04 N/A 0.026±0.00 0.289±0.09 0.096±0.05 0.153±0.08 0.101±0.04 0.064±0.02 0.036±0.02 0.058±0.02 0.049±0.00 0.189±0.13 0.053±0.02 0.100±0.04
ENSMUSG00000084970 ENSMUST00000138377 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.298±2.11

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