C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 44 (choline transporter), member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000374720 SLC44A1-003 ENSG00000070214 9606 + 9:105244622-105397346 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000374720
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000374720 6.095±0.00 3.331±0.00 1.400±0.00 8.082±2.52 3.678±0.76 7.252±0.63 1.251±0.36 3.826±1.19 3.935±1.34 4.505±0.56 0.568±0.00 5.851±2.06 4.903±0.41 3.209±2.69

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00022C CIL_00022C_0002 CGP 9:104781002-105439171
CIL_00033S CIL_00033S_0001 CGP 9:105244622-105552433

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005741 IEA mitochondrial outer membrane
GO:0005886 TAS plasma membrane
GO:0006644 TAS phospholipid metabolic process
GO:0006656 TAS phosphatidylcholine biosynthetic process
GO:0015220 TAS choline transmembrane transporter activity
GO:0015871 TAS choline transport
GO:0016020 IDA membrane
GO:0016021 TAS integral component of membrane
GO:0044281 TAS small molecule metabolic process
GO:0046474 TAS glycerophospholipid biosynthetic process
GO:0055085 TAS transmembrane transport
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000107651 Slc44a1-006 protein_coding Mus_musculus 0 5105
ENSMUST00000102911 Slc44a1-001 protein_coding Mus_musculus 0 2891
ENSMUST00000107647 Slc44a1-005 protein_coding Mus_musculus 0 2625
ENSMUST00000107646 Slc44a1-003 protein_coding Mus_musculus 0 2220
ENSMUST00000107645 Slc44a1-004 protein_coding Mus_musculus 0 2006
ENSMUST00000136607 Slc44a1-002 processed_transcript Mus_musculus 0 195
ENSDART00000011725 slc44a1a-201 protein_coding Danio_rerio 3e-17 97
ENSDART00000134658 slc44a1a-001 protein_coding Danio_rerio 3e-17 97

Loading