C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 44, member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028412 Slc44a1 10090 + 4:53440413-53622478 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000102911 Slc44a1-001 53440413-53622478 protein_coding
  ENSMUST00000107645 Slc44a1-004 53535612-53621798 protein_coding
  ENSMUST00000107646 Slc44a1-003 53440413-53550200 protein_coding
  ENSMUST00000107647 Slc44a1-005 53440684-53563450 protein_coding
  ENSMUST00000107651 Slc44a1-006 53440671-53567818 protein_coding
  ENSMUST00000133582 Slc44a1-007 53596105-53621987 processed_transcript
  ENSMUST00000136607 Slc44a1-002 53440671-53528709 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000102911ENSMUST00000107646ENSMUST00000107647ENSMUST00000107651
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000102911 11.291±1.09 5.621±1.09 10.582±0.17 5.083±3.84 8.933±1.97 16.831±3.08 7.065±1.10 4.924±1.05 2.511±0.80 7.807±1.64 5.811±0.37 8.733±4.07 1.933±0.40 0.810±0.11
ENSMUST00000107646 13.772±1.14 2.781±0.00 N/A N/A N/A 82.409±18.22 N/A 4.252±1.21 2.305±0.49 N/A N/A 15.460±5.84 N/A N/A
ENSMUST00000107647 6.173±0.76 N/A N/A N/A 11.554±6.55 N/A 3.914±0.91 N/A N/A 6.191±1.55 N/A 13.360±0.08 N/A N/A
ENSMUST00000107651 12.155±3.62 8.637±1.29 19.410±0.24 4.063±0.68 9.826±2.56 26.527±3.03 3.200±0.20 9.256±1.38 6.135±1.08 18.029±2.43 1.212±0.17 7.996±2.22 6.706±3.05 0.731±0.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00022C CIL_00022C_0003 CGP 4:53030787-53622478
CIL_00033S CIL_00033S_0002 CGP 4:53440413-53707009

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005741 IEA mitochondrial outer membrane
GO:0005886 IEA plasma membrane
GO:0015220 IDA choline transmembrane transporter activity
GO:0015871 IDA choline transport
GO:0016020 IEA membrane
GO:0016021 IDA integral component of membrane
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015946 slc44a1a solute carrier family 44, member 1a protein_coding Danio_rerio
ENSDARG00000087275 SLC44A1 (2 of 3) solute carrier family 44 (choline transporter), member 1 protein_coding Danio_rerio
ENSDARG00000090982 slc44a1b solute carrier family 44, member 1b protein_coding Danio_rerio
ENSG00000070214 SLC44A1 solute carrier family 44 (choline transporter), member 1 protein_coding Homo_sapiens

Loading