C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 44 (choline transporter), member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000374724 SLC44A1-004 ENSG00000070214 9606 + 9:105244622-105439171 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000374724
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000374724 5.529±0.00 2.083±0.00 13.390±0.00 5.862±1.90 8.087±0.00 2.798±0.72 6.826±0.77 4.909±0.00 6.517±0.82 1.143±0.32 6.494±2.71 5.292±0.00 1.454±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00022C CIL_00022C_0002 CGP 9:104781002-105439171
CIL_00033S CIL_00033S_0001 CGP 9:105244622-105552433

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005741 IEA mitochondrial outer membrane
GO:0005886 TAS plasma membrane
GO:0006644 TAS phospholipid metabolic process
GO:0006656 TAS phosphatidylcholine biosynthetic process
GO:0015220 TAS choline transmembrane transporter activity
GO:0015871 TAS choline transport
GO:0016020 IDA membrane
GO:0016021 TAS integral component of membrane
GO:0044281 TAS small molecule metabolic process
GO:0046474 TAS glycerophospholipid biosynthetic process
GO:0055085 TAS transmembrane transport
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102911 Slc44a1-001 protein_coding Mus_musculus 0 3044
ENSMUST00000107651 Slc44a1-006 protein_coding Mus_musculus 0 2641
ENSMUST00000107647 Slc44a1-005 protein_coding Mus_musculus 0 2623
ENSMUST00000107646 Slc44a1-003 protein_coding Mus_musculus 0 2220
ENSMUST00000107645 Slc44a1-004 protein_coding Mus_musculus 0 2098
ENSMUST00000136607 Slc44a1-002 processed_transcript Mus_musculus 0 195
ENSDART00000011725 slc44a1a-201 protein_coding Danio_rerio 9e-18 97
ENSDART00000134658 slc44a1a-001 protein_coding Danio_rerio 9e-18 97

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