C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: family with sequence similarity 50, member A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000071859 FAM50A 9606 + X:154444126-154450654 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000158526 FAM50A-002 154444459-154450099 protein_coding
  ENST00000393600 FAM50A-001 154444126-154450654 protein_coding
  ENST00000464419 FAM50A-005 154444155-154450654 retained_intron
  ENST00000478509 FAM50A-004 154446266-154449135 retained_intron
  ENST00000481619 FAM50A-007 154444248-154449081 retained_intron
  ENST00000490480 FAM50A-003 154445443-154445882 retained_intron
  ENST00000494278 FAM50A-006 154449887-154450289 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000393600ENST00000464419ENST00000481619
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000393600 65.506±0.00 55.215±0.00 1.523±0.00 20.468±18.25 23.972±22.12 34.508±31.72 11.298±10.92 24.588±23.56 9.839±9.27 17.592±15.86 26.622±25.32 20.650±13.07 33.997±13.87 23.665±20.26
ENST00000464419 N/A 8.353±0.00 N/A 3.086±2.76 3.520±3.13 N/A 0.335±0.00 7.991±0.00 N/A 11.240±0.00 N/A 7.194±0.00 N/A 2.891±0.00
ENST00000481619 N/A N/A 0.883±0.00 0.523±0.00 N/A N/A N/A N/A 1.849±0.00 0.567±0.00 0.943±0.00 5.933±5.71 8.846±0.00 2.765±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003LB CIL_0003LB_0001 CGP X:154436920-154450654
CIL_0006K8 CIL_0006K8_0001 CGP X:154444126-154473646

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0007283 NAS spermatogenesis
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000024895 fam50a family with sequence similarity 50, member A protein_coding Danio_rerio
ENSMUSG00000001962 Fam50a family with sequence similarity 50, member A protein_coding Mus_musculus

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