C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: family with sequence similarity 50, member A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000001962 Fam50a 10090 + X:74313033-74320149 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000114160 Fam50a-001 74313033-74320149 protein_coding
  ENSMUST00000138242 Fam50a-002 74313126-74320134 retained_intron
  ENSMUST00000149312 Fam50a-003 74317468-74317965 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000114160ENSMUST00000138242
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000114160 7.224±2.09 19.819±7.46 20.153±2.66 14.025±1.65 7.082±3.64 8.640±3.89 2.269±0.42 9.238±1.93 10.923±6.82 7.691±1.38 8.872±1.15 19.026±11.51 29.323±6.99 1.326±0.98
ENSMUST00000138242 1.052±0.00 N/A 1.926±0.00 1.535±0.45 1.150±0.17 N/A N/A 0.751±0.08 0.550±0.00 0.812±0.19 0.975±0.14 1.983±0.62 N/A 0.131±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003LB CIL_0003LB_0002 CGP X:74304998-74320149
CIL_0006K8 CIL_0006K8_0002 CGP X:74313033-74344689

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000024895 fam50a family with sequence similarity 50, member A protein_coding Danio_rerio
ENSG00000071859 FAM50A family with sequence similarity 50, member A protein_coding Homo_sapiens

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