C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: family with sequence similarity 50, member A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000393600 FAM50A-001 ENSG00000071859 9606 + X:154444126-154450654 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000393600
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000393600 65.506±0.00 55.215±0.00 1.523±0.00 20.468±18.25 23.972±22.12 34.508±31.72 11.298±10.92 24.588±23.56 9.839±9.27 17.592±15.86 26.622±25.32 20.650±13.07 33.997±13.87 23.665±20.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003LB CIL_0003LB_0001 CGP X:154436920-154450654
CIL_0006K8 CIL_0006K8_0001 CGP X:154444126-154473646

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA:IDA nucleus
GO:0007283 NAS spermatogenesis
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000114160 Fam50a-001 protein_coding Mus_musculus 0 1271
ENSMUST00000039605 Fam50b-201 protein_coding Mus_musculus 0 719
ENSMUST00000138242 Fam50a-002 retained_intron Mus_musculus 0 577
ENSMUST00000149312 Fam50a-003 retained_intron Mus_musculus 1e-37 161

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