C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: family with sequence similarity 3, member A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000447601 FAM3A-004 ENSG00000071889 9606 - X:154506171-154516239 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000447601
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000447601 5.492±0.00 4.590±0.00 3.780±1.29 6.837±0.00 9.040±0.00 19.429±0.00 5.256±0.00 8.695±0.00 6.774±0.00 4.919±4.41 13.283±10.02 13.449±5.21 4.102±0.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003LG CIL_0003LG_0001 CGP X:154487306-154516242

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005576 IEA extracellular region
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000114143 Fam3a-001 protein_coding Mus_musculus 0 817
ENSMUST00000015427 Fam3a-007 protein_coding Mus_musculus 0 806
ENSMUST00000114142 Fam3a-006 protein_coding Mus_musculus 0 804
ENSMUST00000114141 Fam3a-008 protein_coding Mus_musculus 0 713
ENSMUST00000122894 Fam3a-002 protein_coding Mus_musculus 0 712
ENSMUST00000114139 Fam3a-010 protein_coding Mus_musculus 0 654
ENSMUST00000114138 Fam3a-005 protein_coding Mus_musculus 0 401
ENSMUST00000149218 Fam3a-011 nonsense_mediated_decay Mus_musculus 0 359
ENSMUST00000136716 Fam3a-003 retained_intron Mus_musculus 0 226
ENSMUST00000141604 Fam3a-004 nonsense_mediated_decay Mus_musculus 0 193

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