C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cytoplasmic linker associated protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000074054 CLASP1 9606 - 2:121337776-121649587 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000263710 CLASP1-201 121337776-121649476 protein_coding
  ENST00000397587 CLASP1-202 121337776-121649476 protein_coding
  ENST00000409078 CLASP1-001 121337776-121649587 protein_coding
  ENST00000418989 CLASP1-012 121460015-121505093 protein_coding
  ENST00000430234 CLASP1-014 121458916-121490328 processed_transcript
  ENST00000449975 CLASP1-013 121461109-121503988 protein_coding
  ENST00000452274 CLASP1-016 121340722-121503220 nonsense_mediated_decay
  ENST00000455322 CLASP1-203 121339990-121649438 protein_coding
  ENST00000463621 CLASP1-003 121407519-121427470 retained_intron
  ENST00000472776 CLASP1-004 121364119-121388076 retained_intron
  ENST00000474065 CLASP1-010 121462532-121525967 retained_intron
  ENST00000480007 CLASP1-011 121462535-121513073 processed_transcript
  ENST00000485112 CLASP1-009 121515665-121530745 retained_intron
  ENST00000491646 CLASP1-015 121459622-121461195 retained_intron
  ENST00000541377 CLASP1-204 121337776-121649476 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000263710ENST00000397587ENST00000409078ENST00000452274ENST00000455322ENST00000541377
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000263710 N/A N/A N/A 2.256±0.94 N/A N/A N/A 0.903±0.00 N/A 0.665±0.00 N/A N/A N/A N/A
ENST00000397587 N/A N/A N/A N/A N/A N/A N/A 3.169±0.00 N/A N/A 3.243±0.00 N/A N/A N/A
ENST00000409078 1.227±0.00 N/A 0.802±0.00 1.075±0.00 N/A N/A 1.752±0.00 N/A N/A 1.017±0.00 N/A 1.237±0.00 1.471±0.83 N/A
ENST00000452274 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.683±0.00
ENST00000455322 N/A N/A N/A 3.393±0.00 3.876±0.00 2.953±0.00 4.045±0.00 N/A 3.154±0.00 2.104±0.00 2.059±0.00 2.834±0.94 N/A 2.273±0.00
ENST00000541377 2.479±0.00 1.497±0.00 2.203±0.00 2.589±0.22 2.073±0.97 1.839±0.21 3.827±1.91 1.438±0.13 2.552±1.47 1.755±0.17 3.683±0.00 1.667±0.47 0.709±0.19 1.958±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TZ CIL_0007TZ_0001 VISTA 2:120774842-121375741

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000086 TAS G2/M transition of mitotic cell cycle
GO:0000226 IGI microtubule cytoskeleton organization
GO:0000278 TAS mitotic cell cycle
GO:0000776 IDA kinetochore
GO:0001578 IMP microtubule bundle formation
GO:0005488 IEA binding
GO:0005515 IPI:IEA protein binding
GO:0005794 IDA Golgi apparatus
GO:0005813 IDA centrosome
GO:0005828 IEA:TAS kinetochore microtubule
GO:0005829 TAS cytosol
GO:0005876 IDA spindle microtubule
GO:0005881 IEA:IDA cytoplasmic microtubule
GO:0005938 IDA cell cortex
GO:0007020 IMP microtubule nucleation
GO:0007026 IGI negative regulation of microtubule depolymerization
GO:0007163 NAS establishment or maintenance of cell polarity
GO:0007411 TAS axon guidance
GO:0008017 IDA microtubule binding
GO:0010458 IMP exit from mitosis
GO:0016020 IDA membrane
GO:0030981 IDA cortical microtubule cytoskeleton
GO:0031023 IMP microtubule organizing center organization
GO:0031111 IMP negative regulation of microtubule polymerization or depolymerization
GO:0031592 IDA centrosomal corona
GO:0034453 IMP microtubule anchoring
GO:0043515 IEA:IMP kinetochore binding
GO:0051010 IEA:IDA microtubule plus-end binding
GO:0051294 IDA establishment of spindle orientation
GO:0051301 IDA cell division
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010280 clasp1a cytoplasmic linker associated protein 1a protein_coding Danio_rerio
ENSDARG00000088723 CABZ01114089.1 Uncharacterized protein protein_coding Danio_rerio
ENSMUSG00000064302 Clasp1 CLIP associating protein 1 protein_coding Mus_musculus

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