C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: CLIP associating protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000064302 Clasp1 10090 + 1:118389058-118612678 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000049404 Clasp1-201 118389058-118609432 protein_coding
  ENSMUST00000070989 Clasp1-202 118389058-118609432 protein_coding
  ENSMUST00000165223 Clasp1-203 118389058-118609432 protein_coding
  ENSMUST00000178710 Clasp1-204 118389058-118609432 protein_coding
  ENSMUST00000185405 Clasp1-009 118389455-118607165 protein_coding
  ENSMUST00000186349 Clasp1-011 118419560-118608492 protein_coding
  ENSMUST00000187575 Clasp1-015 118604727-118608205 retained_intron
  ENSMUST00000187713 Clasp1-010 118389456-118607165 protein_coding
  ENSMUST00000188441 Clasp1-017 118547211-118547930 retained_intron
  ENSMUST00000188710 Clasp1-013 118419724-118612678 protein_coding
  ENSMUST00000189216 Clasp1-016 118510237-118525873 retained_intron
  ENSMUST00000189262 Clasp1-003 118389455-118608492 protein_coding
  ENSMUST00000189384 Clasp1-014 118534766-118537490 retained_intron
  ENSMUST00000189570 Clasp1-004 118389456-118607739 protein_coding
  ENSMUST00000189676 Clasp1-002 118389344-118503213 retained_intron
  ENSMUST00000189738 Clasp1-007 118419440-118607739 protein_coding
  ENSMUST00000190135 Clasp1-006 118389457-118507576 retained_intron
  ENSMUST00000190571 Clasp1-001 118419724-118608492 protein_coding
  ENSMUST00000190733 Clasp1-008 118389446-118607165 nonsense_mediated_decay
  ENSMUST00000191445 Clasp1-005 118389473-118607165 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000049404ENSMUST00000070989ENSMUST00000165223ENSMUST00000178710ENSMUST00000188710ENSMUST00000189570ENSMUST00000189738ENSMUST00000190733ENSMUST00000191445
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000049404 N/A N/A N/A 9.568±2.35 N/A N/A N/A N/A 0.223±0.00 N/A N/A N/A N/A N/A
ENSMUST00000070989 N/A N/A N/A 6.744±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000165223 2.008±0.67 0.998±0.27 4.760±0.83 N/A 2.342±0.88 1.516±0.34 N/A 1.692±0.60 1.358±0.90 2.755±0.32 2.862±0.38 3.012±2.42 3.394±1.56 N/A
ENSMUST00000178710 4.646±1.05 4.729±0.68 3.042±0.61 16.699±0.00 3.999±1.10 3.149±0.40 39.673±3.79 2.202±0.42 1.348±0.54 4.644±0.69 2.366±0.44 6.049±0.71 1.432±0.58 3.932±1.20
ENSMUST00000188710 0.446±0.00 N/A 0.646±0.00 N/A N/A N/A N/A 0.394±0.00 0.319±0.10 0.674±0.00 0.885±0.10 0.761±0.00 0.331±0.00 N/A
ENSMUST00000189570 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.258±0.00 4.348±0.00 1.759±0.05 N/A
ENSMUST00000189738 N/A N/A N/A 13.519±0.00 N/A N/A N/A N/A N/A N/A N/A 3.843±0.35 2.626±1.01 5.301±0.00
ENSMUST00000190733 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.892±1.56
ENSMUST00000191445 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.485±0.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001VI CIL_0001VI_0002 CGP 1:118321839-118612678
CIL_0001QO CIL_0001QO_0002 CGP 1:118389058-118685168

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000226 IEA microtubule cytoskeleton organization
GO:0000776 IEA kinetochore
GO:0001578 IEA microtubule bundle formation
GO:0005515 IPI protein binding
GO:0005794 IEA Golgi apparatus
GO:0005813 IEA centrosome
GO:0005828 IEA kinetochore microtubule
GO:0005876 IEA spindle microtubule
GO:0005881 IDA cytoplasmic microtubule
GO:0005938 IEA cell cortex
GO:0007020 ISS microtubule nucleation
GO:0007026 IDA negative regulation of microtubule depolymerization
GO:0007067 IEA mitotic nuclear division
GO:0008017 IDA microtubule binding
GO:0010458 IEA exit from mitosis
GO:0016020 IEA membrane
GO:0030981 IEA cortical microtubule cytoskeleton
GO:0031023 ISS microtubule organizing center organization
GO:0031111 IEA negative regulation of microtubule polymerization or depolymerization
GO:0031592 IEA centrosomal corona
GO:0034453 ISS microtubule anchoring
GO:0043515 IEA kinetochore binding
GO:0051010 IEA microtubule plus-end binding
GO:0051294 ISO establishment of spindle orientation
GO:0051301 ISO cell division
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010280 clasp1a cytoplasmic linker associated protein 1a protein_coding Danio_rerio
ENSDARG00000088723 CABZ01114089.1 Uncharacterized protein protein_coding Danio_rerio
ENSG00000074054 CLASP1 cytoplasmic linker associated protein 1 protein_coding Homo_sapiens

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