C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cytoplasmic linker associated protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000541377 CLASP1-204 ENSG00000074054 9606 - 2:121337776-121649476 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000541377
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000541377 2.479±0.00 1.497±0.00 2.203±0.00 2.589±0.22 2.073±0.97 1.839±0.21 3.827±1.91 1.438±0.13 2.552±1.47 1.755±0.17 3.683±0.00 1.667±0.47 0.709±0.19 1.958±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TZ CIL_0007TZ_0001 VISTA 2:120774842-121375741

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000086 TAS G2/M transition of mitotic cell cycle
GO:0000226 IGI microtubule cytoskeleton organization
GO:0000278 TAS mitotic cell cycle
GO:0000776 IDA kinetochore
GO:0001578 IMP microtubule bundle formation
GO:0005488 IEA binding
GO:0005515 IPI:IEA protein binding
GO:0005794 IDA Golgi apparatus
GO:0005813 IDA centrosome
GO:0005828 IEA:TAS kinetochore microtubule
GO:0005829 TAS cytosol
GO:0005876 IDA spindle microtubule
GO:0005881 IEA:IDA cytoplasmic microtubule
GO:0005938 IDA cell cortex
GO:0007020 IMP microtubule nucleation
GO:0007026 IGI negative regulation of microtubule depolymerization
GO:0007163 NAS establishment or maintenance of cell polarity
GO:0007411 TAS axon guidance
GO:0008017 IDA microtubule binding
GO:0010458 IMP exit from mitosis
GO:0016020 IDA membrane
GO:0030981 IDA cortical microtubule cytoskeleton
GO:0031023 IMP microtubule organizing center organization
GO:0031111 IMP negative regulation of microtubule polymerization or depolymerization
GO:0031592 IDA centrosomal corona
GO:0034453 IMP microtubule anchoring
GO:0043515 IEA:IMP kinetochore binding
GO:0051010 IEA:IDA microtubule plus-end binding
GO:0051294 IDA establishment of spindle orientation
GO:0051301 IDA cell division
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000187713 Clasp1-010 protein_coding Mus_musculus 0 6093
ENSMUST00000165223 Clasp1-203 protein_coding Mus_musculus 0 6059
ENSMUST00000189570 Clasp1-004 protein_coding Mus_musculus 0 5969
ENSMUST00000185405 Clasp1-009 protein_coding Mus_musculus 0 5832
ENSMUST00000189738 Clasp1-007 protein_coding Mus_musculus 0 3133
ENSMUST00000178710 Clasp1-204 protein_coding Mus_musculus 0 3112
ENSMUST00000189262 Clasp1-003 protein_coding Mus_musculus 0 3027
ENSMUST00000190733 Clasp1-008 nonsense_mediated_decay Mus_musculus 0 3027
ENSMUST00000191445 Clasp1-005 protein_coding Mus_musculus 0 3011
ENSMUST00000070989 Clasp1-202 protein_coding Mus_musculus 0 2972
ENSMUST00000049404 Clasp1-201 protein_coding Mus_musculus 0 2972
ENSMUST00000188710 Clasp1-013 protein_coding Mus_musculus 0 2883
ENSMUST00000186349 Clasp1-011 protein_coding Mus_musculus 0 2645
ENSMUST00000190571 Clasp1-001 protein_coding Mus_musculus 0 2531
ENSMUST00000190135 Clasp1-006 retained_intron Mus_musculus 0 2351
ENSMUST00000189676 Clasp1-002 retained_intron Mus_musculus 0 2026
ENSDART00000102445 clasp1a-201 protein_coding Danio_rerio 0 632
ENSDART00000137955 clasp1a-001 protein_coding Danio_rerio 0 508
ENSMUST00000187575 Clasp1-015 retained_intron Mus_musculus 0 222
ENSMUST00000189216 Clasp1-016 retained_intron Mus_musculus 1e-34 154
ENSMUST00000188441 Clasp1-017 retained_intron Mus_musculus 1e-19 104

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