C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004NI_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000104177-ENSG00000233932 CGP 9606 15:48134631-48203756
GeneTranscriptPositionBiotype
ENSG00000074803 (SLC12A1)
solute carrier family 12 (sodium/potassium/chloride transporter), member 1 		ENST00000330289 (SLC12A1-002) 48207534-48237349 protein_coding
ENST00000380993 (SLC12A1-201) 48206301-48304076 protein_coding
ENST00000396577 (SLC12A1-001) 48206302-48304078 protein_coding
ENST00000558252 (SLC12A1-007) 48222328-48304076 retained_intron
ENST00000558405 (SLC12A1-006) 48207706-48302997 protein_coding
ENST00000558805 (SLC12A1-012) 48232725-48235344 protein_coding
ENST00000559641 (SLC12A1-005) 48191765-48285127 protein_coding
ENST00000559723 (SLC12A1-010) 48225851-48234925 processed_transcript
ENST00000560692 (SLC12A1-008) 48224326-48304078 retained_intron
ENST00000561031 (SLC12A1-011) 48207720-48221445 protein_coding
ENST00000561127 (SLC12A1-009) 48191664-48230430 protein_coding
ENSG00000104177 (MYEF2)
myelin expression factor 2 		ENST00000267836 (MYEF2-003) 48141797-48178353 protein_coding
ENST00000324324 (MYEF2-001) 48134631-48178517 protein_coding
ENST00000557868 (MYEF2-014) 48157136-48158920 processed_transcript
ENST00000558289 (MYEF2-005) 48139432-48149986 retained_intron
ENST00000558395 (MYEF2-009) 48143061-48159670 protein_coding
ENST00000559057 (MYEF2-013) 48142666-48149313 retained_intron
ENST00000559862 (MYEF2-007) 48159596-48178291 processed_transcript
ENST00000560157 (MYEF2-008) 48162695-48169910 processed_transcript
ENST00000560172 (MYEF2-012) 48141798-48149326 protein_coding
ENST00000560513 (MYEF2-011) 48149197-48154076 retained_intron
ENST00000560530 (MYEF2-004) 48141796-48152274 retained_intron
ENST00000561151 (MYEF2-006) 48162719-48178326 nonsense_mediated_decay
ENST00000561301 (MYEF2-010) 48152117-48158921 retained_intron
ENST00000561351 (MYEF2-002) 48152307-48178316 nonsense_mediated_decay
ENST00000610570 (MYEF2-201) 48152308-48178316 protein_coding
ENST00000616409 (MYEF2-202) 48142652-48178144 protein_coding
ENST00000620867 (MYEF2-203) 48141806-48152280 protein_coding
ENSG00000233932 (CTXN2)
cortexin 2 		ENST00000417307 (CTXN2-001) 48191539-48203756 protein_coding
ENSG00000259385 (RP11-605F22.1)
 ENST00000559875 (RP11-605F22.1-001) 48192191-48201684 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0004NI_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027201-ENSMUSG00000074872 CGP 10090 2:125084628-125147839
GeneTranscriptPositionBiotype
ENSMUSG00000027201 (Myef2)
myelin basic protein expression factor 2, repressor 		ENSMUST00000067780 (Myef2-201) 125087742-125123660 protein_coding
ENSMUST00000089825 (Myef2-002) 125088834-125116873 protein_coding
ENSMUST00000110501 (Myef2-008) 125086271-125123595 nonsense_mediated_decay
ENSMUST00000129945 (Myef2-007) 125084628-125089011 processed_transcript
ENSMUST00000137091 (Myef2-004) 125095708-125123414 protein_coding
ENSMUST00000142718 (Myef2-005) 125087741-125123623 protein_coding
ENSMUST00000147105 (Myef2-003) 125087742-125123661 protein_coding
ENSMUST00000149911 (Myef2-009) 125099635-125123575 retained_intron
ENSMUST00000152367 (Myef2-001) 125086568-125123626 protein_coding
ENSMUSG00000035183 (Slc24a5)
solute carrier family 24, member 5 		ENSMUST00000070353 (Slc24a5-001) 125068124-125088677 protein_coding
ENSMUST00000139615 (Slc24a5-002) 125069244-125083226 processed_transcript
ENSMUST00000149963 (Slc24a5-003) 125080355-125083079 retained_intron
ENSMUSG00000074872 (Ctxn2)
cortexin 2 		ENSMUST00000099452 (Ctxn2-201) 125136692-125147839 protein_coding
ENSMUSG00000087056 (Gm14004)
predicted gene 14004 		ENSMUST00000138875 (Gm14004-001) 125124356-125134327 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004NI_0001ENSG00000074803ENST00000330289ENST00000380993ENST00000396577ENST00000558252ENST00000558405ENST00000558805ENST00000560692ENST00000561031ENST00000561127ENSG00000104177ENST00000267836ENST00000324324ENST00000558289ENST00000558395ENST00000559862ENST00000560157ENST00000560172ENST00000560530ENST00000616409ENST00000620867ENSG00000233932ENST00000417307ENSG00000259385ENST00000559875CIL_0004NI_0002ENSMUSG00000027201ENSMUST00000067780ENSMUST00000089825ENSMUST00000129945ENSMUST00000142718ENSMUST00000147105ENSMUST00000152367ENSMUSG00000035183ENSMUST00000070353ENSMUSG00000074872ENSMUST00000099452ENSMUSG00000087056ENSMUST00000138875
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000074803 ENST00000330289 N/A N/A N/A N/A N/A N/A N/A 0.124±0.00 N/A N/A N/A 0.025±0.00 N/A N/A
ENST00000380993 0.002±0.00 N/A N/A 0.110±0.00 N/A N/A N/A N/A 0.011±0.00 N/A N/A N/A N/A 0.198±0.00
ENST00000396577 N/A N/A N/A N/A N/A N/A N/A 109.060±0.00 0.010±0.00 N/A N/A N/A N/A N/A
ENST00000558252 N/A 0.002±0.00 40.152±0.00 N/A N/A 0.018±0.00 0.002±0.00 N/A N/A N/A 0.010±0.00 N/A N/A N/A
ENST00000558405 N/A N/A N/A 0.427±0.00 0.028±0.00 N/A N/A N/A N/A N/A N/A N/A 0.014±0.00 N/A
ENST00000558805 N/A N/A N/A N/A N/A 0.328±0.00 N/A N/A N/A N/A N/A 0.065±0.00 N/A N/A
ENST00000559641 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559723 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560692 N/A N/A N/A 0.091±0.00 N/A N/A 0.009±0.00 N/A N/A N/A 0.011±0.00 0.015±0.01 0.003±0.00 N/A
ENST00000561031 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.074±0.00 N/A N/A N/A
ENST00000561127 N/A N/A N/A N/A N/A N/A 0.063±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000104177 ENST00000267836 1.259±0.00 0.908±0.00 N/A 3.134±0.90 0.581±0.05 1.256±0.00 0.997±0.00 2.242±0.00 N/A N/A N/A 0.374±0.20 0.291±0.07 7.153±3.36
ENST00000324324 N/A N/A N/A 1.088±0.00 N/A 0.244±0.03 0.157±0.02 0.709±0.00 0.273±0.00 N/A 0.017±0.00 0.073±0.02 N/A N/A
ENST00000557868 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558289 0.519±0.00 0.390±0.00 N/A N/A 0.295±0.00 0.931±0.06 0.415±0.00 0.937±0.88 0.358±0.34 0.784±0.00 N/A 0.308±0.02 0.108±0.00 1.328±0.00
ENST00000558395 N/A N/A N/A 17.714±0.00 1.750±0.00 3.338±0.00 N/A 0.444±0.00 0.042±0.00 N/A 0.247±0.00 1.447±1.37 N/A 27.720±0.00
ENST00000559057 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559862 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.433±1.05 N/A
ENST00000560157 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.366±0.00 N/A
ENST00000560172 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.357±0.00 N/A
ENST00000560513 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560530 N/A N/A 3.090±0.00 N/A N/A N/A N/A 2.297±0.00 1.403±0.00 1.142±0.14 N/A 0.498±0.23 N/A N/A
ENST00000561151 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561301 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561351 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000610570 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000616409 1.447±0.00 1.000±0.00 N/A 6.786±0.00 N/A N/A 0.891±0.00 2.910±0.00 N/A N/A N/A 0.633±0.40 0.106±0.00 14.532±8.73
ENST00000620867 N/A N/A N/A N/A 0.978±0.00 N/A N/A N/A 0.016±0.00 N/A 0.199±0.00 N/A 0.138±0.00 N/A
ENSG00000233932 ENST00000417307 N/A N/A N/A 0.548±0.08 N/A 0.063±0.00 N/A 0.212±0.00 N/A N/A N/A 0.007±0.00 N/A N/A
ENSG00000259385 ENST00000559875 0.021±0.00 N/A N/A 3.516±0.52 0.532±0.00 0.303±0.14 N/A N/A N/A N/A N/A 0.144±0.05 N/A 3.376±1.73
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027201 ENSMUST00000067780 1.195±0.00 N/A 3.974±0.75 37.835±0.41 1.255±0.00 1.022±0.29 1.260±0.10 1.548±0.10 4.063±1.99 2.656±0.00 0.535±0.15 6.003±0.62 2.422±1.08 12.519±0.49
ENSMUST00000089825 N/A N/A N/A 45.123±0.00 N/A N/A 0.606±0.00 N/A 9.089±4.32 N/A N/A 24.827±16.24 6.540±3.90 25.369±27.60
ENSMUST00000110501 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129945 1.257±0.00 N/A N/A 10.664±0.00 N/A N/A N/A 0.457±0.00 2.541±1.57 N/A 0.181±0.04 2.416±0.21 N/A N/A
ENSMUST00000137091 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142718 1.943±0.58 5.099±1.82 2.847±0.11 21.250±10.21 1.860±1.08 2.045±1.21 0.684±0.04 1.374±0.57 2.938±2.42 5.228±0.00 0.311±0.09 5.739±3.11 4.263±1.92 5.515±0.00
ENSMUST00000147105 2.732±1.55 3.733±0.00 N/A N/A 3.831±1.44 2.145±0.15 N/A 1.304±0.42 4.301±3.20 4.480±1.41 0.165±0.00 7.171±3.86 N/A 3.298±0.00
ENSMUST00000149911 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152367 2.511±0.00 12.027±5.51 N/A N/A 3.211±0.88 2.542±0.84 N/A 0.742±0.00 0.955±0.46 4.317±1.25 N/A 13.027±7.62 N/A N/A
ENSMUSG00000035183 ENSMUST00000070353 N/A N/A N/A N/A N/A 0.848±0.00 0.454±0.00 N/A N/A N/A N/A 2.238±0.00 N/A N/A
ENSMUST00000139615 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149963 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000074872 ENSMUST00000099452 N/A N/A 0.008±0.00 1.706±0.76 N/A 0.208±0.00 0.040±0.00 0.159±0.05 0.008±0.00 0.066±0.01 N/A 0.033±0.00 0.022±0.01 0.486±0.12
ENSMUSG00000087056 ENSMUST00000138875 0.072±0.00 N/A N/A 1.000±0.12 N/A 0.327±0.00 N/A 0.137±0.05 N/A N/A N/A 0.276±0.16 0.101±0.00 0.431±0.18

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