C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 12 (sodium/potassium/chloride transporter), member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000558405 SLC12A1-006 ENSG00000074803 9606 + 15:48207706-48302997 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastPlacentaENST00000558405
Transcript ID Brain Breast Placenta
ENST00000558405 0.427±0.00 0.028±0.00 0.014±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004NI CIL_0004NI_0001 CGP 15:48134631-48203756
CIL_0004NH CIL_0004NH_0001 CGP 15:48191539-48304078
CIL_0004QD CIL_0004QD_0002 CGP 15:48191664-48343373

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005886 TAS plasma membrane
GO:0006810 TAS:IEA transport
GO:0006811 TAS:IEA ion transport
GO:0006813 IEA potassium ion transport
GO:0006814 IEA sodium ion transport
GO:0006821 TAS chloride transport
GO:0008219 IEA cell death
GO:0008511 TAS sodium:potassium:chloride symporter activity
GO:0015377 IEA cation:chloride symporter activity
GO:0016020 TAS:IEA membrane
GO:0016021 IEA integral component of membrane
GO:0034220 ISS ion transmembrane transport
GO:0055085 TAS:IEA transmembrane transport
GO:0070062 IDA extracellular vesicular exosome
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028630 Slc12a1-002 protein_coding Mus_musculus 0 3980
ENSMUST00000110494 Slc12a1-001 protein_coding Mus_musculus 0 3819
ENSMUST00000110495 Slc12a1-003 protein_coding Mus_musculus 0 3786
ENSMUST00000147095 Slc12a1-004 retained_intron Mus_musculus 0 701

Loading