C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: melanoma cell adhesion molecule
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000264036 MCAM-001 ENSG00000076706 9606 - 11:119308529-119317116 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000264036
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000264036 126.097±0.00 84.315±0.00 0.423±0.00 16.583±13.01 145.454±132.30 40.607±33.92 13.980±9.89 11.341±10.76 16.244±14.06 72.132±62.26 10.787±6.71 27.018±15.24 114.487±23.21 37.284±34.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000220 CIL_000220_0002 CGP 11:119206042-119321521
CIL_000221 CIL_000221_0002 CGP 11:119308529-119337313

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003094 IEP glomerular filtration
GO:0005515 IEA protein binding
GO:0005615 IEA extracellular space
GO:0005634 IEA nucleus
GO:0005886 NAS plasma membrane
GO:0005925 IDA focal adhesion
GO:0007155 IEA cell adhesion
GO:0009653 TAS anatomical structure morphogenesis
GO:0009897 IDA external side of plasma membrane
GO:0016021 IEA integral component of membrane
GO:0030335 IEA positive regulation of cell migration
GO:0061042 IEP vascular wound healing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034650 Mcam-001 protein_coding Mus_musculus 0 1552
ENSMUST00000098852 Mcam-002 protein_coding Mus_musculus 0 1328
ENSMUST00000132490 Mcam-004 retained_intron Mus_musculus 0 457

Loading