C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: SP140 nuclear body protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000479539 SP140-005 ENSG00000079263 9606 + 2:230310141-230311523 retained_intron

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004AU CIL_0004AU_0003 CGP 2:230167293-230313215
CIL_0004AU CIL_0004AU_0002 CGP 2:230203110-230403732

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000189121 RP23-6O16.1-001 unprocessed_pseudogene Mus_musculus 7e-32 141
ENSMUST00000162896 Gm6264-001 transcribed_unprocessed_pseudogene Mus_musculus 7e-32 141
ENSMUST00000080204 Sp140-001 protein_coding Mus_musculus 7e-32 141
ENSMUST00000186987 RP23-76P9.2-001 unprocessed_pseudogene Mus_musculus 3e-30 135
ENSMUST00000072767 Arhgef12-201 protein_coding Mus_musculus 3e-30 135
ENSMUST00000165665 Arhgef12-202 protein_coding Mus_musculus 3e-30 135
ENSMUST00000160010 Gm7281-001 unprocessed_pseudogene Mus_musculus 4e-29 132

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