C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SP140 nuclear body protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000392045 SP140-002 ENSG00000079263 9606 + 2:230225731-230313212 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonLungTestisENST00000392045
Transcript ID Adrenal Breast Colon Lung Testis
ENST00000392045 8.220±0.00 0.893±0.00 1.394±0.00 2.473±0.00 0.882±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004AU CIL_0004AU_0003 CGP 2:230167293-230313215
CIL_0004AU CIL_0004AU_0002 CGP 2:230203110-230403732

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005515 IPI:IEA protein binding
GO:0005634 TAS:IEA nucleus
GO:0005635 TAS nuclear envelope
GO:0005654 TAS nucleoplasm
GO:0005737 IEA cytoplasm
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0006952 TAS defense response
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000072767 Arhgef12-201 protein_coding Mus_musculus 0 436
ENSMUST00000165665 Arhgef12-202 protein_coding Mus_musculus 0 436
ENSMUST00000080204 Sp140-001 protein_coding Mus_musculus 0 433
ENSMUST00000189121 RP23-6O16.1-001 unprocessed_pseudogene Mus_musculus 0 425
ENSMUST00000160010 Gm7281-001 unprocessed_pseudogene Mus_musculus 0 364
ENSMUST00000162896 Gm6264-001 transcribed_unprocessed_pseudogene Mus_musculus 0 270
ENSMUST00000186987 RP23-76P9.2-001 unprocessed_pseudogene Mus_musculus 0 255
ENSMUST00000160119 Sp140-006 retained_intron Mus_musculus 9.99967e-42 176
ENSMUST00000160487 Gm2389-001 unprocessed_pseudogene Mus_musculus 3e-27 128
ENSMUST00000161497 Sp140-004 protein_coding Mus_musculus 6e-25 121

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