C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: REX1, RNA exonuclease 1 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000170168 REXO1-001 ENSG00000079313 9606 - 19:1815246-1848463 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000170168
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000170168 5.274±0.00 9.834±0.00 6.583±0.00 5.145±0.00 2.940±0.00 3.754±0.00 2.267±1.87 1.552±0.95 2.989±2.14 2.347±2.30 7.681±3.41 9.817±4.62 14.958±2.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000187 CIL_000187_0001 CGP 19:1782075-1848463
CIL_00047J CIL_00047J_0001 CGP 19:1815246-1863568

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0004527 IEA exonuclease activity
GO:0005634 IDA nucleus
GO:0090305 IEA nucleic acid phosphodiester bond hydrolysis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000057910 Rexo1-001 protein_coding Mus_musculus 0 2036
ENSMUST00000183233 Rexo1-003 retained_intron Mus_musculus 0 1535
ENSMUST00000182260 Rexo1-007 protein_coding Mus_musculus 0 1522
ENSMUST00000182604 Rexo1-002 retained_intron Mus_musculus 0 1443
ENSMUST00000182682 Rexo1-004 retained_intron Mus_musculus 0 976
ENSMUST00000183160 Rexo1-008 nonsense_mediated_decay Mus_musculus 0 435
ENSMUST00000183139 Rexo1-006 processed_transcript Mus_musculus 0 377
ENSMUST00000183073 Rexo1-005 nonsense_mediated_decay Mus_musculus 5.99994e-41 174

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