C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ELKS/RAB6-interacting/CAST family member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000082805 ERC1 9606 + 12:990509-1495933 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000347735 ERC1-008 991238-1491567 nonsense_mediated_decay
  ENST00000355446 ERC1-011 1027772-1492487 protein_coding
  ENST00000360905 ERC1-014 991298-1492487 protein_coding
  ENST00000397203 ERC1-201 1027747-1495924 protein_coding
  ENST00000440394 ERC1-013 991267-1493549 nonsense_mediated_decay
  ENST00000515210 ERC1-012 1430277-1444630 processed_transcript
  ENST00000536573 ERC1-003 1083573-1244956 processed_transcript
  ENST00000538971 ERC1-016 1083141-1444589 retained_intron
  ENST00000539007 ERC1-017 1083484-1116201 retained_intron
  ENST00000539802 ERC1-020 1408192-1445055 protein_coding
  ENST00000541503 ERC1-009 1115624-1141740 retained_intron
  ENST00000542302 ERC1-010 991233-1490729 nonsense_mediated_decay
  ENST00000543086 ERC1-001 991208-1495933 protein_coding
  ENST00000543151 ERC1-002 1443291-1491079 retained_intron
  ENST00000543263 ERC1-018 1257138-1371952 processed_transcript
  ENST00000544277 ERC1-007 1203966-1263073 processed_transcript
  ENST00000545318 ERC1-005 990509-1028172 protein_coding
  ENST00000545948 ERC1-004 991273-1490377 nonsense_mediated_decay
  ENST00000546231 ERC1-015 991233-1490729 protein_coding
  ENST00000587595 ERC1-024 998322-1027842 processed_transcript
  ENST00000588412 ERC1-019 1189896-1491079 nonsense_mediated_decay
  ENST00000589028 ERC1-202 1027747-1495924 protein_coding
  ENST00000589132 ERC1-023 991622-1028339 protein_coding
  ENST00000592048 ERC1-006 991263-1116033 protein_coding
  ENST00000611180 ERC1-203 1027747-1490377 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000360905ENST00000397203ENST00000538971ENST00000543086ENST00000543263ENST00000545948ENST00000589028ENST00000611180
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000360905 N/A N/A 2.158±0.00 N/A N/A N/A 0.584±0.00 N/A 3.148±0.00 N/A N/A N/A N/A N/A
ENST00000397203 N/A N/A N/A N/A N/A 2.308±0.00 N/A N/A N/A 1.898±0.00 N/A 2.439±1.11 3.873±0.00 3.927±0.00
ENST00000538971 N/A N/A N/A 4.877±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000543086 N/A N/A N/A 1.696±0.00 N/A N/A N/A N/A 0.450±0.00 2.203±0.00 N/A 3.558±0.00 N/A 1.536±0.00
ENST00000543263 N/A N/A N/A 30.931±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000545948 N/A N/A N/A N/A N/A N/A N/A N/A 3.119±0.00 N/A N/A N/A N/A N/A
ENST00000589028 5.518±0.00 5.710±0.00 N/A 1.691±0.00 2.425±0.00 2.552±0.00 1.821±0.84 2.564±1.39 2.220±0.52 0.984±0.00 2.138±0.00 4.313±1.66 3.259±1.24 3.735±0.00
ENST00000611180 N/A N/A N/A 4.378±0.00 N/A N/A 1.183±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TY CIL_0007TY_0001 VISTA 12:564896-1165613

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 ISS cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0006355 NAS regulation of transcription, DNA-templated
GO:0007252 IDA I-kappaB phosphorylation
GO:0007275 NAS multicellular organismal development
GO:0008385 IDA IkappaB kinase complex
GO:0015031 IEA protein transport
GO:0017137 ISS Rab GTPase binding
GO:0030165 ISS PDZ domain binding
GO:0042147 ISS retrograde transport, endosome to Golgi
GO:0042734 TAS presynaptic membrane
GO:0043522 NAS leucine zipper domain binding
GO:0045202 ISS synapse
GO:0051092 TAS positive regulation of NF-kappaB transcription factor activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000009941 erc1a ELKS/RAB6-interacting/CAST family member 1a protein_coding Danio_rerio
ENSDARG00000031930 erc1b ELKS/RAB6-interacting/CAST family member 1b protein_coding Danio_rerio
ENSDARG00000076014 ERC1 (3 of 3) ELKS/RAB6-interacting/CAST family member 1 protein_coding Danio_rerio
ENSMUSG00000030172 Erc1 ELKS/RAB6-interacting/CAST family member 1 protein_coding Mus_musculus

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