C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ELKS/RAB6-interacting/CAST family member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000515210 ERC1-012 ENSG00000082805 9606 + 12:1430277-1444630 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TY CIL_0007TY_0001 VISTA 12:564896-1165613

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000032279 Erc1-201 protein_coding Mus_musculus 5e-24 115
ENSMUST00000183911 Erc1-007 protein_coding Mus_musculus 5e-24 115
ENSMUST00000184864 Erc1-009 protein_coding Mus_musculus 5e-24 115
ENSMUST00000183703 Erc1-001 protein_coding Mus_musculus 5e-24 115
ENSMUST00000185143 Erc1-008 nonsense_mediated_decay Mus_musculus 2e-23 113
ENSMUST00000184838 Erc1-002 nonsense_mediated_decay Mus_musculus 2e-23 113
ENSMUST00000184320 Erc1-010 nonsense_mediated_decay Mus_musculus 2e-23 113
ENSMUST00000183880 Erc1-004 nonsense_mediated_decay Mus_musculus 2e-23 113
ENSMUST00000185139 Erc1-003 nonsense_mediated_decay Mus_musculus 2e-23 113
ENSMUST00000135399 Usp16-007 retained_intron Mus_musculus 0.00000006 62
ENSMUST00000168162 Pdgfra-202 protein_coding Mus_musculus 0.00001 55
ENSMUST00000000476 Pdgfra-201 protein_coding Mus_musculus 0.00001 55

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