C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: regulatory factor X, 2 (influences HLA class II expression)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000087903 RFX2 9606 - 19:5993164-6199572 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000303657 RFX2-002 5993164-6110534 protein_coding
  ENST00000359161 RFX2-004 5993517-6049232 protein_coding
  ENST00000585324 RFX2-025 6176275-6199524 processed_transcript
  ENST00000586302 RFX2-012 6026163-6110446 protein_coding
  ENST00000586806 RFX2-013 6010182-6110482 protein_coding
  ENST00000586940 RFX2-015 6027164-6110478 processed_transcript
  ENST00000587181 RFX2-010 6040203-6110476 protein_coding
  ENST00000587321 RFX2-014 6013039-6110480 protein_coding
  ENST00000587700 RFX2-024 6189728-6199529 processed_transcript
  ENST00000588021 RFX2-016 6007866-6026699 retained_intron
  ENST00000589340 RFX2-019 6002722-6008226 protein_coding
  ENST00000589523 RFX2-026 6191326-6199507 processed_transcript
  ENST00000589641 RFX2-022 6191570-6199572 processed_transcript
  ENST00000589712 RFX2-023 6175873-6199563 processed_transcript
  ENST00000589742 RFX2-018 6007775-6110512 protein_coding
  ENST00000590778 RFX2-020 5994816-5997373 retained_intron
  ENST00000590822 RFX2-009 6078101-6110468 processed_transcript
  ENST00000592172 RFX2-007 6026196-6110473 processed_transcript
  ENST00000592281 RFX2-011 6040186-6057283 protein_coding
  ENST00000592337 RFX2-017 6008189-6023205 processed_transcript
  ENST00000592473 RFX2-005 6040035-6113761 protein_coding
  ENST00000592546 RFX2-003 5994502-6110532 protein_coding
  ENST00000592883 RFX2-021 6040074-6199529 protein_coding
  ENST00000593241 RFX2-006 6040086-6110601 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000303657ENST00000359161ENST00000586940ENST00000587181ENST00000587700ENST00000588021ENST00000592281ENST00000592337ENST00000592546ENST00000592883
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000303657 N/A N/A N/A N/A N/A N/A N/A 0.293±0.00 0.358±0.00 1.348±0.00 N/A 5.290±0.00 N/A 62.011±41.93
ENST00000359161 1.000±0.00 0.665±0.00 0.145±0.00 0.820±0.48 1.764±0.00 N/A 0.299±0.00 N/A 0.462±0.00 4.231±0.00 0.141±0.09 1.874±1.27 0.505±0.00 21.353±0.00
ENST00000586940 N/A N/A N/A N/A N/A 1.255±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587181 N/A N/A N/A 0.913±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587700 N/A 0.513±0.00 0.127±0.00 N/A 0.236±0.00 0.137±0.00 0.143±0.00 0.149±0.12 0.032±0.00 N/A N/A 0.281±0.00 0.243±0.04 N/A
ENST00000588021 N/A N/A N/A N/A N/A 0.585±0.00 0.218±0.00 0.155±0.00 N/A N/A N/A N/A N/A N/A
ENST00000592281 N/A N/A N/A N/A N/A N/A N/A N/A 6.574±0.00 N/A N/A N/A N/A N/A
ENST00000592337 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.018±0.00 N/A N/A
ENST00000592546 0.744±0.00 N/A N/A N/A N/A N/A N/A 0.117±0.00 N/A 0.340±0.00 N/A 0.415±0.00 0.534±0.10 N/A
ENST00000592883 N/A N/A N/A 1.366±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005GQ CIL_0005GQ_0002 CGP 19:5993164-6199572

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013575 rfx2 regulatory factor X, 2 (influences HLA class II expression) protein_coding Danio_rerio
ENSMUSG00000024206 Rfx2 regulatory factor X, 2 (influences HLA class II expression) protein_coding Mus_musculus

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