C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005GQ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000013575-ENSDARG00000004094 CGP 7955 8:20611005-20730169
GeneTranscriptPositionBiotype
ENSDARG00000013575 (rfx2)
regulatory factor X, 2 (influences HLA class II expression) 		ENSDART00000029939 (rfx2-001) 20611005-20676269 protein_coding
ENSDART00000122943 (rfx2-201) 20611082-20644885 protein_coding
ENSDART00000132218 (rfx2-004) 20634438-20656567 protein_coding
ENSDART00000133141 (rfx2-002) 20634303-20676072 protein_coding
ENSDART00000147634 (rfx2-003) 20635896-20676140 protein_coding
CIL_0005GQ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000087903-ENSG00000087903 CGP 9606 19:5993164-6199572
GeneTranscriptPositionBiotype
ENSG00000087903 (RFX2)
regulatory factor X, 2 (influences HLA class II expression) 		ENST00000303657 (RFX2-002) 5993164-6110534 protein_coding
ENST00000359161 (RFX2-004) 5993517-6049232 protein_coding
ENST00000585324 (RFX2-025) 6176275-6199524 processed_transcript
ENST00000586302 (RFX2-012) 6026163-6110446 protein_coding
ENST00000586806 (RFX2-013) 6010182-6110482 protein_coding
ENST00000586940 (RFX2-015) 6027164-6110478 processed_transcript
ENST00000587181 (RFX2-010) 6040203-6110476 protein_coding
ENST00000587321 (RFX2-014) 6013039-6110480 protein_coding
ENST00000587700 (RFX2-024) 6189728-6199529 processed_transcript
ENST00000588021 (RFX2-016) 6007866-6026699 retained_intron
ENST00000589340 (RFX2-019) 6002722-6008226 protein_coding
ENST00000589523 (RFX2-026) 6191326-6199507 processed_transcript
ENST00000589641 (RFX2-022) 6191570-6199572 processed_transcript
ENST00000589712 (RFX2-023) 6175873-6199563 processed_transcript
ENST00000589742 (RFX2-018) 6007775-6110512 protein_coding
ENST00000590778 (RFX2-020) 5994816-5997373 retained_intron
ENST00000590822 (RFX2-009) 6078101-6110468 processed_transcript
ENST00000592172 (RFX2-007) 6026196-6110473 processed_transcript
ENST00000592281 (RFX2-011) 6040186-6057283 protein_coding
ENST00000592337 (RFX2-017) 6008189-6023205 processed_transcript
ENST00000592473 (RFX2-005) 6040035-6113761 protein_coding
ENST00000592546 (RFX2-003) 5994502-6110532 protein_coding
ENST00000592883 (RFX2-021) 6040074-6199529 protein_coding
ENST00000593241 (RFX2-006) 6040086-6110601 protein_coding
ENSG00000266983 (CTC-232P5.1)
 ENST00000587836 (CTC-232P5.1-001) 5978403-6020363 antisense
ENSG00000267262 (CTC-232P5.3)
 ENST00000587759 (CTC-232P5.3-001) 6067953-6077119 antisense
ENSG00000267299 (CTB-66B24.1)
 ENST00000588342 (CTB-66B24.1-001) 6109322-6125797 antisense
ENSG00000267589 (CTC-232P5.4)
 ENST00000586415 (CTC-232P5.4-001) 6072823-6073527 processed_pseudogene
CIL_0005GQ_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000024206-ENSMUSG00000024207 CGP 10090 17:56775897-56874447
GeneTranscriptPositionBiotype
ENSMUSG00000024206 (Rfx2)
regulatory factor X, 2 (influences HLA class II expression) 		ENSMUST00000002444 (Rfx2-201) 56775897-56831008 protein_coding
ENSMUST00000086801 (Rfx2-202) 56775897-56831008 protein_coding
ENSMUSG00000024207 (Acsbg2)
acyl-CoA synthetase bubblegum family member 2 		ENSMUST00000043062 (Acsbg2-001) 56843103-56874447 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005GQ_0001ENSDARG00000013575ENSDART00000029939ENSDART00000122943ENSDART00000132218ENSDART00000133141ENSDART00000147634CIL_0005GQ_0002ENSG00000087903ENST00000303657ENST00000359161ENST00000585324ENST00000586302ENST00000586806ENST00000586940ENST00000587181ENST00000587321ENST00000587700ENST00000588021ENST00000589340ENST00000589523ENST00000589641ENST00000589712ENST00000589742ENST00000590778ENST00000590822ENST00000592172ENST00000592281ENST00000592337ENST00000592473ENST00000592546ENST00000592883ENST00000593241ENSG00000266983ENST00000587836ENSG00000267262ENST00000587759ENSG00000267299ENST00000588342ENSG00000267589ENST00000586415CIL_0005GQ_0003ENSMUSG00000024206ENSMUST00000002444ENSMUST00000086801ENSMUSG00000024207ENSMUST00000043062
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005GQ_0001ENSDARG00000013575ENSDART00000029939ENSDART00000122943CIL_0005GQ_0002ENSG00000087903ENST00000303657ENST00000359161ENST00000586940ENST00000587181ENST00000587700ENST00000588021ENST00000592281ENST00000592337ENST00000592546ENST00000592883ENSG00000266983ENST00000587836ENSG00000267262ENST00000587759ENSG00000267299ENST00000588342ENSG00000267589ENST00000586415CIL_0005GQ_0003ENSMUSG00000024206ENSMUST00000002444ENSMUST00000086801ENSMUSG00000024207ENSMUST00000043062
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000013575 ENSDART00000029939 N/A N/A N/A 3.060±0.83 N/A N/A 3.192±0.64 3.916±0.00 0.149±0.00 N/A 1.044±0.00 N/A N/A N/A
ENSDART00000122943 N/A N/A N/A N/A N/A N/A 6.153±3.85 9.711±0.12 0.084±0.00 N/A 0.648±0.00 N/A N/A N/A
ENSDART00000132218 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000133141 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000147634 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000087903 ENST00000303657 N/A N/A N/A N/A N/A N/A N/A 0.293±0.00 0.358±0.00 1.348±0.00 N/A 5.290±0.00 N/A 62.011±41.93
ENST00000359161 1.000±0.00 0.665±0.00 0.145±0.00 0.820±0.48 1.764±0.00 N/A 0.299±0.00 N/A 0.462±0.00 4.231±0.00 0.141±0.09 1.874±1.27 0.505±0.00 21.353±0.00
ENST00000585324 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586302 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586806 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586940 N/A N/A N/A N/A N/A 1.255±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587181 N/A N/A N/A 0.913±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587321 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587700 N/A 0.513±0.00 0.127±0.00 N/A 0.236±0.00 0.137±0.00 0.143±0.00 0.149±0.12 0.032±0.00 N/A N/A 0.281±0.00 0.243±0.04 N/A
ENST00000588021 N/A N/A N/A N/A N/A 0.585±0.00 0.218±0.00 0.155±0.00 N/A N/A N/A N/A N/A N/A
ENST00000589340 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589523 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589641 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589712 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589742 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590778 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590822 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592172 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592281 N/A N/A N/A N/A N/A N/A N/A N/A 6.574±0.00 N/A N/A N/A N/A N/A
ENST00000592337 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.018±0.00 N/A N/A
ENST00000592473 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592546 0.744±0.00 N/A N/A N/A N/A N/A N/A 0.117±0.00 N/A 0.340±0.00 N/A 0.415±0.00 0.534±0.10 N/A
ENST00000592883 N/A N/A N/A 1.366±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000593241 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000266983 ENST00000587836 0.027±0.00 0.087±0.00 N/A 0.224±0.00 0.364±0.00 0.217±0.00 0.054±0.00 0.089±0.00 0.053±0.00 N/A N/A 0.089±0.04 N/A 0.116±0.07
ENSG00000267262 ENST00000587759 0.196±0.00 0.204±0.00 N/A N/A 0.205±0.00 0.467±0.00 N/A N/A N/A 0.851±0.00 N/A 0.169±0.12 N/A 3.186±1.71
ENSG00000267299 ENST00000588342 N/A N/A N/A 0.286±0.00 N/A 0.149±0.00 0.048±0.00 N/A N/A N/A N/A 0.406±0.00 N/A 0.223±0.13
ENSG00000267589 ENST00000586415 N/A 0.133±0.00 N/A N/A 0.322±0.00 N/A N/A N/A N/A N/A 0.191±0.00 N/A N/A 0.040±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024206 ENSMUST00000002444 N/A N/A N/A 0.487±0.04 N/A 0.752±0.00 0.205±0.07 0.254±0.03 0.356±0.00 N/A 0.172±0.00 0.991±0.22 N/A 69.555±23.80
ENSMUST00000086801 6.845±3.10 3.881±0.59 3.143±1.33 0.772±0.24 3.810±1.39 4.874±0.45 1.200±0.37 1.331±0.48 3.537±3.43 6.903±0.93 0.894±0.20 6.201±1.93 0.892±0.38 36.149±12.06
ENSMUSG00000024207 ENSMUST00000043062 N/A 0.103±0.05 0.011±0.00 0.020±0.00 0.012±0.00 N/A 0.040±0.01 0.025±0.01 0.015±0.00 0.013±0.00 N/A 0.040±0.02 0.022±0.00 81.500±8.75

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