C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 4, sodium borate transporter, member 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000539553 SLC4A11-003 ENSG00000088836 9606 - 20:3227636-3239190 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000539553
Transcript ID Brain Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000539553 0.463±0.00 0.040±0.00 2.404±0.00 0.013±0.00 0.228±0.00 0.982±0.00 0.548±0.30 0.125±0.04 1.230±0.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000065 CIL_000065_0001 CGP 20:3208868-3239190
CIL_000340 CIL_000340_0001 CGP 20:3227417-3407625

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005272 IDA sodium channel activity
GO:0005452 IEA inorganic anion exchanger activity
GO:0006810 IEA transport
GO:0006814 IDA sodium ion transport
GO:0006820 IEA anion transport
GO:0015106 IDA bicarbonate transmembrane transporter activity
GO:0015252 IDA hydrogen ion channel activity
GO:0015293 IEA symporter activity
GO:0015701 IDA bicarbonate transport
GO:0015992 IDA proton transport
GO:0016021 IEA integral component of membrane
GO:0016323 TAS basolateral plasma membrane
GO:0030003 IDA cellular cation homeostasis
GO:0035445 IDA borate transmembrane transport
GO:0035725 IDA sodium ion transmembrane transport
GO:0042044 ISS fluid transport
GO:0046713 IDA borate transport
GO:0046715 IDA borate transmembrane transporter activity
GO:0046983 IDA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000099362 Slc4a11-001 protein_coding Mus_musculus 0 2486
ENSMUST00000134647 Slc4a11-002 retained_intron Mus_musculus 0 937
ENSMUST00000144945 Slc4a11-003 retained_intron Mus_musculus 0 730
ENSMUST00000138028 Slc4a11-004 retained_intron Mus_musculus 0 444

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