C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leprecan-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000319332 LEPREL1-001 ENSG00000090530 9606 - 3:189956728-190120929 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000319332
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000319332 1.355±0.00 1.794±0.00 4.307±0.00 0.571±0.00 2.531±0.00 1.634±1.17 0.572±0.00 19.800±18.91 0.352±0.15 5.791±1.56 0.151±0.00 7.238±4.43 5.166±1.09 2.498±1.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000DP CIL_0000DP_0001 CGP 3:189631416-190122437
CIL_0000DQ CIL_0000DQ_0001 CGP 3:189956728-190322475

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005506 IEA iron ion binding
GO:0005604 ISS basement membrane
GO:0005783 IDA endoplasmic reticulum
GO:0005788 TAS endoplasmic reticulum lumen
GO:0005794 IDA Golgi apparatus
GO:0008285 IDA negative regulation of cell proliferation
GO:0016491 IEA oxidoreductase activity
GO:0016705 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0016706 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0019511 IDA peptidyl-proline hydroxylation
GO:0019797 IDA procollagen-proline 3-dioxygenase activity
GO:0030198 TAS extracellular matrix organization
GO:0031418 IEA L-ascorbic acid binding
GO:0032963 IDA collagen metabolic process
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000039990 Leprel1-001 protein_coding Mus_musculus 0 2268
ENSDART00000089827 leprel1-201 protein_coding Danio_rerio 0 294
ENSDART00000150513 leprel1-001 protein_coding Danio_rerio 0 294

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