C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leprecan-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000427335 LEPREL1-002 ENSG00000090530 9606 - 3:189956831-190122437 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartENST00000427335
Transcript ID Heart
ENST00000427335 0.052±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000DP CIL_0000DP_0001 CGP 3:189631416-190122437
CIL_0000DQ CIL_0000DQ_0001 CGP 3:189956728-190322475

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005506 IEA iron ion binding
GO:0005604 ISS basement membrane
GO:0005783 IDA endoplasmic reticulum
GO:0005788 TAS endoplasmic reticulum lumen
GO:0005794 IDA Golgi apparatus
GO:0008285 IDA negative regulation of cell proliferation
GO:0016491 IEA oxidoreductase activity
GO:0016705 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0016706 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0019511 IDA peptidyl-proline hydroxylation
GO:0019797 IDA procollagen-proline 3-dioxygenase activity
GO:0030198 TAS extracellular matrix organization
GO:0031418 IEA L-ascorbic acid binding
GO:0032963 IDA collagen metabolic process
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000039990 Leprel1-001 protein_coding Mus_musculus 0 1836
ENSDART00000089827 leprel1-201 protein_coding Danio_rerio 0 294
ENSDART00000150513 leprel1-001 protein_coding Danio_rerio 0 294

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