C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAB11 family interacting protein 3 (class II)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000090565 RAB11FIP3 9606 + 16:425619-523011 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000262305 RAB11FIP3-001 425619-523011 protein_coding
  ENST00000412256 RAB11FIP3-004 482657-497448 protein_coding
  ENST00000434585 RAB11FIP3-010 426379-522355 protein_coding
  ENST00000449879 RAB11FIP3-009 474924-503063 protein_coding
  ENST00000450428 RAB11FIP3-201 474850-522478 protein_coding
  ENST00000452814 RAB11FIP3-002 474869-505605 protein_coding
  ENST00000461009 RAB11FIP3-007 510453-519108 retained_intron
  ENST00000464263 RAB11FIP3-006 510563-519762 retained_intron
  ENST00000483002 RAB11FIP3-008 474924-489101 retained_intron
  ENST00000487899 RAB11FIP3-005 502750-519018 retained_intron
  ENST00000495663 RAB11FIP3-003 488942-497158 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000262305ENST00000434585ENST00000450428ENST00000464263ENST00000487899
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000262305 N/A 1.163±0.00 N/A 2.193±1.57 2.147±0.00 2.615±0.00 N/A 17.235±0.00 2.380±0.00 2.166±1.83 2.430±0.00 2.416±0.33 2.962±0.88 3.100±0.01
ENST00000434585 10.791±0.00 5.989±0.00 4.292±0.00 8.488±4.21 3.456±2.50 5.062±4.33 2.552±2.14 5.729±5.23 3.509±0.00 3.143±1.99 3.634±2.14 8.517±6.50 7.382±1.88 7.164±0.99
ENST00000450428 N/A N/A N/A N/A N/A N/A N/A 9.135±8.60 1.226±0.00 N/A N/A 2.375±0.37 1.984±0.19 2.521±0.82
ENST00000464263 N/A N/A N/A N/A N/A N/A N/A 4.938±0.00 N/A N/A N/A N/A N/A N/A
ENST00000487899 N/A N/A N/A N/A N/A N/A 1.233±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00031N CIL_00031N_0002 CGP 16:401826-523011

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000910 IMP cytokinesis
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005768 IDA endosome
GO:0005813 IDA centrosome
GO:0005815 IDA microtubule organizing center
GO:0016020 IEA membrane
GO:0016192 TAS vesicle-mediated transport
GO:0017137 NAS Rab GTPase binding
GO:0030306 IPI ADP-ribosylation factor binding
GO:0030496 IDA midbody
GO:0032154 IDA cleavage furrow
GO:0032456 IDA endocytic recycling
GO:0042803 IDA protein homodimerization activity
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0045171 IDA intercellular bridge
GO:0055037 IDA recycling endosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016490 rab11fip3 RAB11 family interacting protein 3 (class II) protein_coding Danio_rerio
ENSMUSG00000037098 Rab11fip3 RAB11 family interacting protein 3 (class II) protein_coding Mus_musculus

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