C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: poly(A) binding protein, cytoplasmic 4 (inducible form)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000090621 PABPC4 9606 - 1:39560816-39576790 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000372856 PABPC4-004 39560816-39576751 protein_coding
  ENST00000372857 PABPC4-001 39560816-39576744 protein_coding
  ENST00000372858 PABPC4-002 39560816-39576401 protein_coding
  ENST00000372862 PABPC4-003 39560816-39576253 protein_coding
  ENST00000421687 PABPC4-017 39561687-39572484 protein_coding
  ENST00000437136 PABPC4-013 39560816-39564491 protein_coding
  ENST00000451091 PABPC4-011 39572393-39576790 protein_coding
  ENST00000461578 PABPC4-014 39563796-39564536 retained_intron
  ENST00000468476 PABPC4-006 39560816-39564526 retained_intron
  ENST00000470443 PABPC4-007 39565106-39575781 nonsense_mediated_decay
  ENST00000474378 PABPC4-008 39568825-39572418 protein_coding
  ENST00000477556 PABPC4-009 39563616-39564528 retained_intron
  ENST00000482028 PABPC4-012 39560816-39562010 retained_intron
  ENST00000483770 PABPC4-016 39564233-39565183 retained_intron
  ENST00000484555 PABPC4-015 39562384-39564124 retained_intron
  ENST00000492468 PABPC4-005 39560816-39564038 retained_intron
  ENST00000492519 PABPC4-010 39569495-39569990 retained_intron
  ENST00000513632 PABPC4-020 39565299-39568408 retained_intron
  ENST00000525045 PABPC4-023 39563446-39565233 retained_intron
  ENST00000525669 PABPC4-022 39564385-39568856 retained_intron
  ENST00000525751 PABPC4-019 39568698-39571175 retained_intron
  ENST00000527718 PABPC4-021 39563614-39568857 protein_coding
  ENST00000529216 PABPC4-025 39568862-39571195 processed_transcript
  ENST00000530186 PABPC4-024 39561552-39562188 protein_coding
  ENST00000531243 PABPC4-018 39575938-39576787 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000372856ENST00000372857ENST00000372858ENST00000372862ENST00000421687ENST00000437136ENST00000470443ENST00000492468ENST00000525751ENST00000527718
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000372856 N/A N/A N/A N/A N/A N/A 21.604±0.00 N/A N/A 8.567±0.00 107.967±0.00 3.073±0.00 N/A N/A
ENST00000372857 N/A N/A 2.452±0.00 1.070±0.00 N/A N/A N/A 7.967±0.00 6.288±0.00 4.293±1.85 N/A 19.896±0.00 9.597±0.48 N/A
ENST00000372858 15.956±0.00 N/A N/A 2.468±0.00 4.584±0.00 4.010±0.00 12.916±9.25 N/A 3.033±0.52 13.800±0.00 105.614±0.00 33.090±26.48 23.721±6.39 28.014±0.00
ENST00000372862 25.524±0.00 27.218±0.00 N/A 11.302±0.00 27.802±0.00 32.796±0.00 N/A 14.228±0.00 5.394±2.71 5.670±3.23 37.682±30.62 N/A N/A 66.052±0.00
ENST00000421687 28.708±0.00 23.031±0.00 N/A 7.077±4.67 20.412±12.97 19.346±16.16 5.799±0.00 9.288±1.18 4.523±0.00 3.416±0.00 85.528±0.00 20.467±12.51 41.139±0.00 60.833±2.48
ENST00000437136 N/A N/A N/A N/A N/A N/A N/A N/A 14.547±0.00 N/A N/A N/A N/A N/A
ENST00000470443 N/A N/A N/A N/A N/A 3.623±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492468 N/A N/A N/A N/A N/A 2.846±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525751 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 91.885±0.00 132.255±0.00 214.358±0.00
ENST00000527718 N/A N/A N/A 6.307±0.00 19.165±0.00 8.246±0.00 N/A N/A 15.431±0.00 9.374±0.00 54.773±0.00 N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006396 TAS RNA processing
GO:0006401 TAS RNA catabolic process
GO:0006412 TAS translation
GO:0007596 TAS blood coagulation
GO:0008143 IDA poly(A) binding
GO:0008266 IDA poly(U) RNA binding
GO:0010494 IDA cytoplasmic stress granule
GO:0030529 IDA ribonucleoprotein complex
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059259 pabpc4 poly(A) binding protein, cytoplasmic 4 (inducible form) protein_coding Danio_rerio
ENSMUSG00000011257 Pabpc4 poly(A) binding protein, cytoplasmic 4 protein_coding Mus_musculus
ENSMUSG00000062093 Gm10110 predicted gene 10110 protein_coding Mus_musculus

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