C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: poly(A) binding protein, cytoplasmic 4 (inducible form)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000372858 PABPC4-002 ENSG00000090621 9606 - 1:39560816-39576401 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000372858
Transcript ID Adipose Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000372858 15.956±0.00 2.468±0.00 4.584±0.00 4.010±0.00 12.916±9.25 3.033±0.52 13.800±0.00 105.614±0.00 33.090±26.48 23.721±6.39 28.014±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006396 TAS RNA processing
GO:0006401 TAS RNA catabolic process
GO:0006412 TAS translation
GO:0007596 TAS blood coagulation
GO:0008143 IDA poly(A) binding
GO:0008266 IDA poly(U) RNA binding
GO:0010494 IDA cytoplasmic stress granule
GO:0030529 IDA ribonucleoprotein complex
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000080178 Pabpc4-001 protein_coding Mus_musculus 0 2990
ENSMUST00000119791 Gm12620-001 processed_pseudogene Mus_musculus 0 2396
ENSMUST00000117339 Gm12626-001 processed_pseudogene Mus_musculus 0 2394
ENSMUST00000119849 Gm12623-001 processed_pseudogene Mus_musculus 0 2394
ENSMUST00000140182 Gm12612-001 processed_pseudogene Mus_musculus 0 2379
ENSMUST00000117060 Gm11841-001 processed_pseudogene Mus_musculus 0 2342
ENSMUST00000120647 Gm11839-001 processed_pseudogene Mus_musculus 0 2281
ENSMUST00000106243 Pabpc4-003 protein_coding Mus_musculus 0 2049
ENSMUST00000078734 Pabpc4-002 protein_coding Mus_musculus 0 1977
ENSMUST00000106241 Pabpc4-004 protein_coding Mus_musculus 0 1977
ENSMUST00000081204 Gm10110-201 protein_coding Mus_musculus 0 1877
ENSMUST00000119395 Gm5466-001 processed_pseudogene Mus_musculus 0 1186
ENSMUST00000183940 Pabpc4-005 nonsense_mediated_decay Mus_musculus 0 1179
ENSMUST00000124991 Pabpc4-006 processed_transcript Mus_musculus 0 881
ENSDART00000082327 pabpc4-001 protein_coding Danio_rerio 0 837
ENSMUST00000146156 Pabpc4-007 retained_intron Mus_musculus 0 680
ENSDART00000148392 pabpc1a-002 protein_coding Danio_rerio 0 621
ENSDART00000024729 pabpc1a-001 protein_coding Danio_rerio 0 621
ENSMUST00000171455 Gm17572-201 processed_pseudogene Mus_musculus 0 425
ENSDART00000149449 pabpc1a-006 processed_transcript Danio_rerio 0 326
ENSMUST00000118386 Gm15332-001 unprocessed_pseudogene Mus_musculus 0 278
ENSMUST00000146065 Gm16345-001 processed_pseudogene Mus_musculus 0 211
ENSMUST00000121408 Gm15329-001 unprocessed_pseudogene Mus_musculus 1.96182e-44 185
ENSDART00000155722 TMEM54 (2 of 2)-001 processed_transcript Danio_rerio 8e-33 147

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