C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: poly(A) binding protein, cytoplasmic 4 (inducible form)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000421687 PABPC4-017 ENSG00000090621 9606 - 1:39561687-39572484 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000421687
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000421687 28.708±0.00 23.031±0.00 7.077±4.67 20.412±12.97 19.346±16.16 5.799±0.00 9.288±1.18 4.523±0.00 3.416±0.00 85.528±0.00 20.467±12.51 41.139±0.00 60.833±2.48

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000080178 Pabpc4-001 protein_coding Mus_musculus 0 1805
ENSMUST00000119849 Gm12623-001 processed_pseudogene Mus_musculus 0 1677
ENSMUST00000140182 Gm12612-001 processed_pseudogene Mus_musculus 0 1674
ENSMUST00000117339 Gm12626-001 processed_pseudogene Mus_musculus 0 1672
ENSMUST00000119791 Gm12620-001 processed_pseudogene Mus_musculus 0 1668
ENSMUST00000117060 Gm11841-001 processed_pseudogene Mus_musculus 0 1622
ENSMUST00000120647 Gm11839-001 processed_pseudogene Mus_musculus 0 1600
ENSMUST00000106243 Pabpc4-003 protein_coding Mus_musculus 0 1537
ENSMUST00000081204 Gm10110-201 protein_coding Mus_musculus 0 1483
ENSMUST00000078734 Pabpc4-002 protein_coding Mus_musculus 0 1465
ENSMUST00000106241 Pabpc4-004 protein_coding Mus_musculus 0 1465
ENSMUST00000119395 Gm5466-001 processed_pseudogene Mus_musculus 0 1186
ENSMUST00000183940 Pabpc4-005 nonsense_mediated_decay Mus_musculus 0 1179
ENSMUST00000124991 Pabpc4-006 processed_transcript Mus_musculus 0 584
ENSDART00000148392 pabpc1a-002 protein_coding Danio_rerio 0 414
ENSDART00000024729 pabpc1a-001 protein_coding Danio_rerio 0 414
ENSMUST00000146156 Pabpc4-007 retained_intron Mus_musculus 0 390
ENSMUST00000171455 Gm17572-201 processed_pseudogene Mus_musculus 0 307
ENSMUST00000118386 Gm15332-001 unprocessed_pseudogene Mus_musculus 0 272
ENSMUST00000146065 Gm16345-001 processed_pseudogene Mus_musculus 0 211
ENSDART00000149449 pabpc1a-006 processed_transcript Danio_rerio 0 198
ENSMUST00000121408 Gm15329-001 unprocessed_pseudogene Mus_musculus 9.80909e-45 185

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