C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: retinitis pigmentosa GTPase regulator interacting protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000092200 RPGRIP1 9606 + 14:21287939-21351301 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000382933 RPGRIP1-002 21317539-21351301 protein_coding
  ENST00000400017 RPGRIP1-001 21287977-21351295 protein_coding
  ENST00000553500 RPGRIP1-007 21320151-21325867 processed_transcript
  ENST00000553927 RPGRIP1-005 21323924-21351298 retained_intron
  ENST00000554303 RPGRIP1-008 21321373-21324898 protein_coding
  ENST00000554750 RPGRIP1-013 21301149-21302969 retained_intron
  ENST00000555322 RPGRIP1-004 21321359-21351301 nonsense_mediated_decay
  ENST00000555489 RPGRIP1-003 21321917-21351301 nonsense_mediated_decay
  ENST00000555587 RPGRIP1-009 21321364-21351301 protein_coding
  ENST00000556336 RPGRIP1-010 21287939-21351301 protein_coding
  ENST00000557351 RPGRIP1-006 21317553-21321290 protein_coding
  ENST00000557606 RPGRIP1-012 21328599-21343165 protein_coding
  ENST00000557771 RPGRIP1-011 21287939-21351301 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000382933ENST00000400017ENST00000553927ENST00000554303ENST00000554750ENST00000555322ENST00000555489ENST00000555587ENST00000556336ENST00000557606
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000382933 N/A 0.203±0.00 N/A 0.129±0.00 0.146±0.00 N/A 0.065±0.00 N/A N/A N/A N/A 0.034±0.02 N/A 27.195±8.30
ENST00000400017 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.023±0.00 N/A N/A
ENST00000553927 N/A N/A N/A N/A N/A 0.064±0.00 N/A N/A N/A 0.040±0.00 N/A 0.048±0.00 0.085±0.00 N/A
ENST00000554303 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.258±0.00 N/A N/A N/A N/A
ENST00000554750 N/A N/A N/A 0.068±0.00 N/A 0.074±0.00 0.112±0.00 0.071±0.00 N/A 0.055±0.00 N/A N/A N/A N/A
ENST00000555322 N/A 0.288±0.00 N/A N/A N/A N/A N/A 0.036±0.00 N/A N/A N/A 0.049±0.00 N/A N/A
ENST00000555489 0.206±0.00 N/A 0.080±0.00 0.068±0.00 0.296±0.00 0.072±0.00 N/A N/A 0.092±0.06 0.075±0.00 0.063±0.00 0.049±0.01 0.173±0.10 N/A
ENST00000555587 N/A N/A N/A N/A N/A N/A N/A 0.158±0.13 N/A N/A N/A N/A N/A N/A
ENST00000556336 N/A 0.068±0.00 N/A N/A N/A N/A 0.054±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000557606 0.310±0.00 N/A N/A N/A 0.246±0.00 N/A 0.470±0.24 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00027O CIL_00027O_0001 CGP 14:21209136-21351301
CIL_00027P CIL_00027P_0001 CGP 14:21287939-21384266

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005929 IEA cilium
GO:0005930 IEA axoneme
GO:0007601 IEA visual perception
GO:0031513 IEA nonmotile primary cilium
GO:0042462 IEA eye photoreceptor cell development
GO:0050896 IEA response to stimulus
GO:0060041 IEA retina development in camera-type eye

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076055 RPGRIP1 retinitis pigmentosa GTPase regulator interacting protein 1 protein_coding Danio_rerio
ENSMUSG00000057132 Rpgrip1 retinitis pigmentosa GTPase regulator interacting protein 1 protein_coding Mus_musculus

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