C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinitis pigmentosa GTPase regulator interacting protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000555489 RPGRIP1-003 ENSG00000092200 9606 + 14:21321917-21351301 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonLiverLungMuscleOvaryPlacentaENST00000555489
Transcript ID Adipose Bladder Brain Breast Colon Liver Lung Muscle Ovary Placenta
ENST00000555489 0.206±0.00 0.080±0.00 0.068±0.00 0.296±0.00 0.072±0.00 0.092±0.06 0.075±0.00 0.063±0.00 0.049±0.01 0.173±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00027O CIL_00027O_0001 CGP 14:21209136-21351301
CIL_00027P CIL_00027P_0001 CGP 14:21287939-21384266

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000180901 Rpgrip1-007 retained_intron Mus_musculus 0 760
ENSMUST00000111600 Rpgrip1-008 protein_coding Mus_musculus 0 760
ENSMUST00000111603 Rpgrip1-001 protein_coding Mus_musculus 0 760
ENSMUST00000181401 Rpgrip1-009 protein_coding Mus_musculus 0 739
ENSMUST00000181017 Rpgrip1-016 protein_coding Mus_musculus 0 625
ENSMUST00000180646 Rpgrip1-002 nonsense_mediated_decay Mus_musculus 0 625
ENSMUST00000181823 Rpgrip1-003 retained_intron Mus_musculus 0 560
ENSMUST00000180500 Rpgrip1-019 protein_coding Mus_musculus 0 512
ENSMUST00000181736 Rpgrip1-010 nonsense_mediated_decay Mus_musculus 0 285

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