C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: retinitis pigmentosa GTPase regulator interacting protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000057132 Rpgrip1 10090 + 14:52110704-52163546 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000111600 Rpgrip1-008 52110939-52161339 protein_coding
  ENSMUST00000111603 Rpgrip1-001 52110704-52161307 protein_coding
  ENSMUST00000180388 Rpgrip1-015 52147000-52149496 retained_intron
  ENSMUST00000180433 Rpgrip1-011 52118977-52119558 retained_intron
  ENSMUST00000180484 Rpgrip1-004 52110922-52120886 retained_intron
  ENSMUST00000180500 Rpgrip1-019 52150440-52160140 protein_coding
  ENSMUST00000180513 Rpgrip1-013 52145364-52149306 protein_coding
  ENSMUST00000180646 Rpgrip1-002 52110903-52160446 nonsense_mediated_decay
  ENSMUST00000180901 Rpgrip1-007 52136577-52161338 retained_intron
  ENSMUST00000181017 Rpgrip1-016 52149518-52160296 protein_coding
  ENSMUST00000181208 Rpgrip1-018 52152058-52156306 retained_intron
  ENSMUST00000181297 Rpgrip1-006 52136532-52149404 retained_intron
  ENSMUST00000181401 Rpgrip1-009 52112157-52160218 protein_coding
  ENSMUST00000181627 Rpgrip1-014 52145424-52150493 nonsense_mediated_decay
  ENSMUST00000181673 Rpgrip1-005 52114782-52134862 retained_intron
  ENSMUST00000181709 Rpgrip1-012 52121109-52140594 nonsense_mediated_decay
  ENSMUST00000181736 Rpgrip1-010 52158451-52163546 nonsense_mediated_decay
  ENSMUST00000181823 Rpgrip1-003 52110929-52159425 retained_intron
  ENSMUST00000181862 Rpgrip1-017 52149607-52150713 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastKidneyLungTestisENSMUST00000180901ENSMUST00000181017ENSMUST00000181297ENSMUST00000181823
Transcript ID Breast Kidney Lung Testis
ENSMUST00000180901 N/A N/A N/A 26.421±1.22
ENSMUST00000181017 N/A N/A N/A 79.980±2.85
ENSMUST00000181297 N/A N/A N/A 110.008±4.60
ENSMUST00000181823 1.013±0.28 0.315±0.00 0.602±0.04 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00027O CIL_00027O_0002 CGP 14:52073380-52163546
CIL_00027P CIL_00027P_0002 CGP 14:52110704-52197239

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005929 IDA cilium
GO:0005930 IDA axoneme
GO:0007601 IMP visual perception
GO:0031513 IDA nonmotile primary cilium
GO:0042462 IMP eye photoreceptor cell development
GO:0050896 IEA response to stimulus
GO:0060041 IMP retina development in camera-type eye

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076055 RPGRIP1 retinitis pigmentosa GTPase regulator interacting protein 1 protein_coding Danio_rerio
ENSG00000092200 RPGRIP1 retinitis pigmentosa GTPase regulator interacting protein 1 protein_coding Homo_sapiens

Loading