C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinitis pigmentosa GTPase regulator interacting protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000382933 RPGRIP1-002 ENSG00000092200 9606 + 14:21317539-21351301 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastHeartOvaryTestisENST00000382933
Transcript ID Adrenal Brain Breast Heart Ovary Testis
ENST00000382933 0.203±0.00 0.129±0.00 0.146±0.00 0.065±0.00 0.034±0.02 27.195±8.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00027O CIL_00027O_0001 CGP 14:21209136-21351301
CIL_00027P CIL_00027P_0001 CGP 14:21287939-21384266

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0050896 IEA response to stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000180901 Rpgrip1-007 retained_intron Mus_musculus 0 760
ENSMUST00000111600 Rpgrip1-008 protein_coding Mus_musculus 0 760
ENSMUST00000111603 Rpgrip1-001 protein_coding Mus_musculus 0 760
ENSMUST00000181401 Rpgrip1-009 protein_coding Mus_musculus 0 739
ENSMUST00000181017 Rpgrip1-016 protein_coding Mus_musculus 0 625
ENSMUST00000180646 Rpgrip1-002 nonsense_mediated_decay Mus_musculus 0 625
ENSMUST00000181823 Rpgrip1-003 retained_intron Mus_musculus 0 560
ENSMUST00000180500 Rpgrip1-019 protein_coding Mus_musculus 0 512
ENSMUST00000181736 Rpgrip1-010 nonsense_mediated_decay Mus_musculus 0 285

Loading