C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: gem (nuclear organelle) associated protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000092208 GEMIN2 9606 + 14:39114223-39136973 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000250379 GEMIN2-002 39114306-39136775 protein_coding
  ENST00000308317 GEMIN2-001 39114223-39136973 protein_coding
  ENST00000396249 GEMIN2-003 39114306-39136496 protein_coding
  ENST00000412033 GEMIN2-005 39114306-39136541 nonsense_mediated_decay
  ENST00000524781 GEMIN2-012 39133661-39134370 protein_coding
  ENST00000524980 GEMIN2-007 39131773-39136746 retained_intron
  ENST00000525153 GEMIN2-004 39114285-39136973 nonsense_mediated_decay
  ENST00000525430 GEMIN2-006 39114324-39122701 retained_intron
  ENST00000527381 GEMIN2-010 39114331-39128341 protein_coding
  ENST00000529365 GEMIN2-008 39131787-39133961 retained_intron
  ENST00000531684 GEMIN2-011 39114320-39132023 nonsense_mediated_decay
  ENST00000534684 GEMIN2-009 39114323-39132068 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000250379ENST00000308317ENST00000396249ENST00000412033ENST00000524781ENST00000524980ENST00000525153ENST00000527381ENST00000529365ENST00000531684ENST00000534684
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000250379 1.738±0.00 1.568±0.00 N/A 0.990±0.31 3.224±0.00 1.632±0.00 1.140±0.00 1.061±0.00 0.562±0.00 1.207±0.00 1.150±0.00 2.268±0.96 0.616±0.07 2.275±0.44
ENST00000308317 N/A N/A N/A N/A N/A N/A 0.197±0.00 N/A N/A N/A N/A 2.066±1.20 0.925±0.14 0.999±0.00
ENST00000396249 N/A N/A N/A N/A 0.853±0.00 2.428±0.00 N/A 1.068±0.00 0.211±0.00 N/A 0.506±0.13 N/A 0.783±0.00 N/A
ENST00000412033 1.605±0.00 1.028±0.00 N/A 0.849±0.07 N/A 1.205±0.49 N/A 1.070±0.00 N/A N/A 1.956±0.10 1.967±0.56 0.557±0.00 2.946±0.09
ENST00000524781 N/A 1.038±0.00 N/A 0.977±0.00 N/A N/A N/A N/A 0.210±0.00 0.355±0.00 N/A 1.209±0.00 N/A N/A
ENST00000524980 N/A 1.168±0.00 2.239±0.00 1.862±0.00 N/A N/A 0.317±0.00 1.495±0.00 0.671±0.42 N/A N/A 1.409±0.00 N/A N/A
ENST00000525153 N/A N/A N/A 0.444±0.00 0.830±0.00 0.636±0.00 0.573±0.00 N/A 0.149±0.00 0.184±0.00 0.730±0.00 N/A N/A 0.621±0.00
ENST00000527381 N/A N/A N/A N/A 0.697±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529365 N/A N/A N/A N/A N/A 1.592±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531684 N/A N/A N/A 1.572±0.00 N/A N/A N/A N/A N/A 0.602±0.00 N/A N/A N/A N/A
ENST00000534684 N/A N/A 0.844±0.00 1.321±0.00 N/A N/A 0.160±0.00 N/A 0.806±0.00 N/A N/A 0.415±0.00 0.420±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003VW CIL_0003VW_0001 CGP 14:39031919-39136973
CIL_0003VX CIL_0003VX_0001 CGP 14:39114223-39170532

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000245 IEA spliceosomal complex assembly
GO:0000375 TAS RNA splicing, via transesterification reactions
GO:0000387 IDA:IEA spliceosomal snRNP assembly
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005681 IEA spliceosomal complex
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 IDA cytosol
GO:0006397 TAS mRNA processing
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0032797 IDA SMN complex
GO:0034660 TAS ncRNA metabolic process
GO:0034719 IDA SMN-Sm protein complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015638 gemin2 gem (nuclear organelle) associated protein 2 protein_coding Danio_rerio
ENSMUSG00000060121 Gemin2 gem (nuclear organelle) associated protein 2 protein_coding Mus_musculus

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