C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: gem (nuclear organelle) associated protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000412033 GEMIN2-005 ENSG00000092208 9606 + 14:39114306-39136541 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonKidneyMuscleOvaryPlacentaTestisENST00000412033
Transcript ID Adipose Adrenal Brain Colon Kidney Muscle Ovary Placenta Testis
ENST00000412033 1.605±0.00 1.028±0.00 0.849±0.07 1.205±0.49 1.070±0.00 1.956±0.10 1.967±0.56 0.557±0.00 2.946±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003VW CIL_0003VW_0001 CGP 14:39031919-39136973
CIL_0003VX CIL_0003VX_0001 CGP 14:39114223-39170532

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000245 IEA spliceosomal complex assembly
GO:0000375 TAS RNA splicing, via transesterification reactions
GO:0000387 IDA spliceosomal snRNP assembly
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005681 IEA spliceosomal complex
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 IDA cytosol
GO:0006397 TAS mRNA processing
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0032797 IDA SMN complex
GO:0034660 TAS ncRNA metabolic process
GO:0034719 IDA SMN-Sm protein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021379 Gemin2-001 protein_coding Mus_musculus 0 894
ENSMUST00000182188 Gemin2-002 retained_intron Mus_musculus 0 760
ENSMUST00000190772 RP24-145A22.1-001 processed_pseudogene Mus_musculus 0 673

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