C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003VW_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000100934-ENSG00000092208 CGP 9606 14:39031919-39136973
GeneTranscriptPositionBiotype
ENSG00000092208 (GEMIN2)
gem (nuclear organelle) associated protein 2 		ENST00000250379 (GEMIN2-002) 39114306-39136775 protein_coding
ENST00000308317 (GEMIN2-001) 39114223-39136973 protein_coding
ENST00000396249 (GEMIN2-003) 39114306-39136496 protein_coding
ENST00000412033 (GEMIN2-005) 39114306-39136541 nonsense_mediated_decay
ENST00000524781 (GEMIN2-012) 39133661-39134370 protein_coding
ENST00000524980 (GEMIN2-007) 39131773-39136746 retained_intron
ENST00000525153 (GEMIN2-004) 39114285-39136973 nonsense_mediated_decay
ENST00000525430 (GEMIN2-006) 39114324-39122701 retained_intron
ENST00000527381 (GEMIN2-010) 39114331-39128341 protein_coding
ENST00000529365 (GEMIN2-008) 39131787-39133961 retained_intron
ENST00000531684 (GEMIN2-011) 39114320-39132023 nonsense_mediated_decay
ENST00000534684 (GEMIN2-009) 39114323-39132068 protein_coding
ENSG00000100934 (SEC23A)
Sec23 homolog A (S. cerevisiae) 		ENST00000307712 (SEC23A-001) 39031920-39103528 protein_coding
ENST00000537403 (SEC23A-002) 39031919-39088723 protein_coding
ENST00000545328 (SEC23A-006) 39032941-39103235 protein_coding
ENST00000548032 (SEC23A-011) 39092761-39103212 protein_coding
ENST00000553925 (SEC23A-015) 39064549-39067211 processed_transcript
ENST00000553970 (SEC23A-012) 39094898-39103243 protein_coding
ENST00000554615 (SEC23A-004) 39031919-39041433 retained_intron
ENST00000555017 (SEC23A-020) 39091573-39103652 protein_coding
ENST00000555363 (SEC23A-016) 39033204-39041244 retained_intron
ENST00000555425 (SEC23A-018) 39093185-39109646 protein_coding
ENST00000555682 (SEC23A-021) 39091370-39092594 processed_transcript
ENST00000556092 (SEC23A-010) 39091658-39103233 protein_coding
ENST00000557280 (SEC23A-013) 39094898-39103233 protein_coding
ENST00000557437 (SEC23A-009) 39095999-39103829 protein_coding
ENSG00000258591 (RP11-545M17.3)
 ENST00000556877 (RP11-545M17.3-001) 39108342-39108707 processed_pseudogene
ENSG00000259121 (RP11-545M17.2)
 ENST00000554037 (RP11-545M17.2-001) 39090901-39091101 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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CIL_0003VW_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000020986-ENSMUSG00000060121 CGP 10090 12:58958383-59028470
GeneTranscriptPositionBiotype
ENSMUSG00000020986 (Sec23a)
SEC23A (S. cerevisiae) 		ENSMUST00000021375 (Sec23a-001) 58958383-59012017 protein_coding
ENSMUST00000134223 (Sec23a-002) 59006654-59012017 retained_intron
ENSMUST00000154399 (Sec23a-003) 58966615-58971271 retained_intron
ENSMUST00000165134 (Sec23a-004) 58959704-59007235 protein_coding
ENSMUST00000169976 (Sec23a-005) 58972990-58982704 retained_intron
ENSMUSG00000060121 (Gemin2)
gem (nuclear organelle) associated protein 2 		ENSMUST00000021379 (Gemin2-001) 59013393-59028470 protein_coding
ENSMUST00000182188 (Gemin2-002) 59013454-59028399 retained_intron
ENSMUST00000182710 (Gemin2-003) 59024666-59027887 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003VW_0001ENSG00000092208ENST00000250379ENST00000308317ENST00000396249ENST00000412033ENST00000524781ENST00000524980ENST00000525153ENST00000525430ENST00000527381ENST00000529365ENST00000531684ENST00000534684ENSG00000100934ENST00000307712ENST00000537403ENST00000545328ENST00000548032ENST00000553925ENST00000553970ENST00000554615ENST00000555017ENST00000555363ENST00000555425ENST00000555682ENST00000556092ENST00000557280ENST00000557437ENSG00000258591ENST00000556877ENSG00000259121ENST00000554037CIL_0003VW_0002ENSMUSG00000020986ENSMUST00000021375ENSMUST00000134223ENSMUST00000154399ENSMUST00000165134ENSMUST00000169976ENSMUSG00000060121ENSMUST00000021379ENSMUST00000182188ENSMUST00000182710
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003VW_0001ENSG00000092208ENST00000250379ENST00000308317ENST00000396249ENST00000412033ENST00000524781ENST00000524980ENST00000525153ENST00000527381ENST00000529365ENST00000531684ENST00000534684ENSG00000100934ENST00000307712ENST00000545328ENSG00000258591ENST00000556877ENSG00000259121ENST00000554037CIL_0003VW_0002ENSMUSG00000020986ENSMUST00000021375ENSMUST00000134223ENSMUST00000165134ENSMUSG00000060121ENSMUST00000021379ENSMUST00000182188
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000092208 ENST00000250379 1.738±0.00 1.568±0.00 N/A 0.990±0.31 3.224±0.00 1.632±0.00 1.140±0.00 1.061±0.00 0.562±0.00 1.207±0.00 1.150±0.00 2.268±0.96 0.616±0.07 2.275±0.44
ENST00000308317 N/A N/A N/A N/A N/A N/A 0.197±0.00 N/A N/A N/A N/A 2.066±1.20 0.925±0.14 0.999±0.00
ENST00000396249 N/A N/A N/A N/A 0.853±0.00 2.428±0.00 N/A 1.068±0.00 0.211±0.00 N/A 0.506±0.13 N/A 0.783±0.00 N/A
ENST00000412033 1.605±0.00 1.028±0.00 N/A 0.849±0.07 N/A 1.205±0.49 N/A 1.070±0.00 N/A N/A 1.956±0.10 1.967±0.56 0.557±0.00 2.946±0.09
ENST00000524781 N/A 1.038±0.00 N/A 0.977±0.00 N/A N/A N/A N/A 0.210±0.00 0.355±0.00 N/A 1.209±0.00 N/A N/A
ENST00000524980 N/A 1.168±0.00 2.239±0.00 1.862±0.00 N/A N/A 0.317±0.00 1.495±0.00 0.671±0.42 N/A N/A 1.409±0.00 N/A N/A
ENST00000525153 N/A N/A N/A 0.444±0.00 0.830±0.00 0.636±0.00 0.573±0.00 N/A 0.149±0.00 0.184±0.00 0.730±0.00 N/A N/A 0.621±0.00
ENST00000525430 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527381 N/A N/A N/A N/A 0.697±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529365 N/A N/A N/A N/A N/A 1.592±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531684 N/A N/A N/A 1.572±0.00 N/A N/A N/A N/A N/A 0.602±0.00 N/A N/A N/A N/A
ENST00000534684 N/A N/A 0.844±0.00 1.321±0.00 N/A N/A 0.160±0.00 N/A 0.806±0.00 N/A N/A 0.415±0.00 0.420±0.00 N/A
ENSG00000100934 ENST00000307712 20.439±0.00 15.349±0.00 N/A 8.733±5.66 12.332±9.05 23.423±0.00 11.367±0.00 7.795±4.18 19.904±0.00 10.569±0.00 6.325±4.13 12.916±6.75 6.174±0.33 13.805±8.37
ENST00000537403 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000545328 4.840±0.00 N/A 0.980±0.00 6.975±0.00 6.851±0.00 8.488±0.00 5.189±1.82 3.052±0.00 16.271±0.00 5.686±0.00 4.988±0.49 9.927±0.00 1.473±0.00 N/A
ENST00000548032 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553925 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553970 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554615 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555017 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555363 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555425 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555682 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556092 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557280 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557437 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000258591 ENST00000556877 N/A 0.162±0.00 N/A 1.192±0.76 N/A N/A N/A 0.476±0.40 N/A 0.905±0.00 N/A 0.114±0.00 0.180±0.00 0.206±0.13
ENSG00000259121 ENST00000554037 0.297±0.00 0.217±0.00 N/A 0.341±0.00 0.226±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020986 ENSMUST00000021375 10.064±1.51 3.756±1.69 10.107±4.63 12.406±5.35 6.218±1.23 6.913±1.38 6.711±0.94 5.396±1.20 10.474±3.95 6.607±1.09 11.459±2.86 7.312±2.74 10.895±1.95 7.657±3.72
ENSMUST00000134223 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.308±0.00
ENSMUST00000154399 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000165134 5.865±0.86 2.422±0.88 7.191±0.00 4.131±0.00 3.776±1.67 3.554±0.88 4.510±1.12 1.858±0.88 6.585±2.08 1.660±0.14 6.285±0.98 5.532±2.25 8.520±4.78 17.934±7.75
ENSMUST00000169976 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000060121 ENSMUST00000021379 1.287±0.46 2.112±0.48 3.336±0.13 2.492±1.02 1.212±0.49 2.358±0.59 1.589±0.31 1.850±0.46 6.705±2.98 1.923±0.13 2.362±0.32 2.591±1.19 5.186±2.48 2.255±0.33
ENSMUST00000182188 0.993±0.18 0.837±0.36 N/A 0.460±0.00 0.440±0.14 1.191±0.04 0.317±0.05 0.474±0.19 0.989±0.30 0.522±0.24 N/A 0.862±0.24 0.387±0.00 0.622±0.17
ENSMUST00000182710 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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