C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003VX_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000092208-ENSG00000182400 CGP 9606 14:39114223-39170532
GeneTranscriptPositionBiotype
ENSG00000092208 (GEMIN2)
gem (nuclear organelle) associated protein 2 		ENST00000250379 (GEMIN2-002) 39114306-39136775 protein_coding
ENST00000308317 (GEMIN2-001) 39114223-39136973 protein_coding
ENST00000396249 (GEMIN2-003) 39114306-39136496 protein_coding
ENST00000412033 (GEMIN2-005) 39114306-39136541 nonsense_mediated_decay
ENST00000524781 (GEMIN2-012) 39133661-39134370 protein_coding
ENST00000524980 (GEMIN2-007) 39131773-39136746 retained_intron
ENST00000525153 (GEMIN2-004) 39114285-39136973 nonsense_mediated_decay
ENST00000525430 (GEMIN2-006) 39114324-39122701 retained_intron
ENST00000527381 (GEMIN2-010) 39114331-39128341 protein_coding
ENST00000529365 (GEMIN2-008) 39131787-39133961 retained_intron
ENST00000531684 (GEMIN2-011) 39114320-39132023 nonsense_mediated_decay
ENST00000534684 (GEMIN2-009) 39114323-39132068 protein_coding
ENSG00000182400 (TRAPPC6B)
trafficking protein particle complex 6B 		ENST00000330149 (TRAPPC6B-002) 39147812-39170322 protein_coding
ENST00000347691 (TRAPPC6B-001) 39147812-39170393 protein_coding
ENST00000469361 (TRAPPC6B-003) 39147811-39170532 retained_intron
ENST00000554018 (TRAPPC6B-006) 39151797-39170329 protein_coding
ENST00000555269 (TRAPPC6B-007) 39150118-39170353 nonsense_mediated_decay
ENST00000556765 (TRAPPC6B-005) 39151811-39170430 nonsense_mediated_decay
ENST00000557764 (TRAPPC6B-004) 39149990-39170314 processed_transcript
ENSG00000241984 (RPL7AP2)
ribosomal protein L7a pseudogene 2 		ENST00000496515 (RPL7AP2-001) 39156742-39157852 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0003VX_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000060121-ENSMUSG00000020993 CGP 10090 12:59013393-59061461
GeneTranscriptPositionBiotype
ENSMUSG00000020993 (Trappc6b)
trafficking protein particle complex 6B 		ENSMUST00000021380 (Trappc6b-201) 59043093-59061461 protein_coding
ENSMUSG00000060121 (Gemin2)
gem (nuclear organelle) associated protein 2 		ENSMUST00000021379 (Gemin2-001) 59013393-59028470 protein_coding
ENSMUST00000182188 (Gemin2-002) 59013454-59028399 retained_intron
ENSMUST00000182710 (Gemin2-003) 59024666-59027887 retained_intron
ENSMUSG00000065232 (Gm22973)
predicted gene, 22973 		ENSMUST00000083298 (Gm22973-201) 59040335-59040525 snRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003VX_0001ENSG00000092208ENST00000250379ENST00000308317ENST00000396249ENST00000412033ENST00000524781ENST00000524980ENST00000525153ENST00000525430ENST00000527381ENST00000529365ENST00000531684ENST00000534684ENSG00000182400ENST00000330149ENST00000347691ENST00000469361ENST00000554018ENST00000555269ENST00000556765ENST00000557764ENSG00000241984ENST00000496515CIL_0003VX_0002ENSMUSG00000020993ENSMUST00000021380ENSMUSG00000060121ENSMUST00000021379ENSMUST00000182188ENSMUST00000182710ENSMUSG00000065232ENSMUST00000083298
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003VX_0001ENSG00000092208ENST00000250379ENST00000308317ENST00000396249ENST00000412033ENST00000524781ENST00000524980ENST00000525153ENST00000527381ENST00000529365ENST00000531684ENST00000534684ENSG00000182400ENST00000330149ENST00000347691ENST00000469361ENST00000555269ENST00000556765ENSG00000241984ENST00000496515CIL_0003VX_0002ENSMUSG00000020993ENSMUST00000021380ENSMUSG00000060121ENSMUST00000021379ENSMUST00000182188ENSMUSG00000065232ENSMUST00000083298
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000092208 ENST00000250379 1.738±0.00 1.568±0.00 N/A 0.990±0.31 3.224±0.00 1.632±0.00 1.140±0.00 1.061±0.00 0.562±0.00 1.207±0.00 1.150±0.00 2.268±0.96 0.616±0.07 2.275±0.44
ENST00000308317 N/A N/A N/A N/A N/A N/A 0.197±0.00 N/A N/A N/A N/A 2.066±1.20 0.925±0.14 0.999±0.00
ENST00000396249 N/A N/A N/A N/A 0.853±0.00 2.428±0.00 N/A 1.068±0.00 0.211±0.00 N/A 0.506±0.13 N/A 0.783±0.00 N/A
ENST00000412033 1.605±0.00 1.028±0.00 N/A 0.849±0.07 N/A 1.205±0.49 N/A 1.070±0.00 N/A N/A 1.956±0.10 1.967±0.56 0.557±0.00 2.946±0.09
ENST00000524781 N/A 1.038±0.00 N/A 0.977±0.00 N/A N/A N/A N/A 0.210±0.00 0.355±0.00 N/A 1.209±0.00 N/A N/A
ENST00000524980 N/A 1.168±0.00 2.239±0.00 1.862±0.00 N/A N/A 0.317±0.00 1.495±0.00 0.671±0.42 N/A N/A 1.409±0.00 N/A N/A
ENST00000525153 N/A N/A N/A 0.444±0.00 0.830±0.00 0.636±0.00 0.573±0.00 N/A 0.149±0.00 0.184±0.00 0.730±0.00 N/A N/A 0.621±0.00
ENST00000525430 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527381 N/A N/A N/A N/A 0.697±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529365 N/A N/A N/A N/A N/A 1.592±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531684 N/A N/A N/A 1.572±0.00 N/A N/A N/A N/A N/A 0.602±0.00 N/A N/A N/A N/A
ENST00000534684 N/A N/A 0.844±0.00 1.321±0.00 N/A N/A 0.160±0.00 N/A 0.806±0.00 N/A N/A 0.415±0.00 0.420±0.00 N/A
ENSG00000182400 ENST00000330149 4.635±0.00 3.663±0.00 N/A 11.800±1.48 3.913±1.75 2.191±1.20 3.382±0.60 2.229±1.32 3.834±1.29 2.788±0.37 2.023±0.99 5.408±2.43 4.170±2.55 10.472±2.83
ENST00000347691 0.932±0.00 N/A 1.887±0.00 N/A 2.810±0.00 1.525±0.97 N/A 2.439±0.47 N/A 2.295±0.93 0.343±0.00 1.313±0.26 0.657±0.19 N/A
ENST00000469361 N/A 0.422±0.00 1.657±0.00 N/A 0.595±0.00 N/A N/A 0.371±0.00 N/A N/A N/A 0.802±0.00 N/A N/A
ENST00000554018 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555269 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.415±0.00
ENST00000556765 N/A N/A N/A 13.605±0.00 N/A 4.379±0.00 4.642±0.00 N/A 11.127±0.00 7.099±0.00 2.175±0.00 6.525±0.00 N/A N/A
ENST00000557764 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000241984 ENST00000496515 0.088±0.00 0.117±0.00 0.247±0.00 0.205±0.00 0.098±0.00 0.068±0.00 0.108±0.00 0.096±0.00 N/A 0.023±0.00 N/A 0.063±0.02 0.077±0.00 0.099±0.04
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020993 ENSMUST00000021380 37.483±15.05 105.388±77.02 44.222±6.90 43.014±9.29 25.346±11.68 45.176±18.10 19.828±3.69 36.958±5.37 23.732±8.85 49.980±37.96 21.359±0.91 43.416±17.31 39.454±8.77 32.078±4.76
ENSMUSG00000060121 ENSMUST00000021379 1.287±0.46 2.112±0.48 3.336±0.13 2.492±1.02 1.212±0.49 2.358±0.59 1.589±0.31 1.850±0.46 6.705±2.98 1.923±0.13 2.362±0.32 2.591±1.19 5.186±2.48 2.255±0.33
ENSMUST00000182188 0.993±0.18 0.837±0.36 N/A 0.460±0.00 0.440±0.14 1.191±0.04 0.317±0.05 0.474±0.19 0.989±0.30 0.522±0.24 N/A 0.862±0.24 0.387±0.00 0.622±0.17
ENSMUST00000182710 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000065232 ENSMUST00000083298 N/A N/A 0.429±0.00 1.010±0.00 N/A N/A N/A 3.998±0.00 1.715±1.05 N/A N/A 10.961±0.00 315.424±407.80 5.752±0.08

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