C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: heterogeneous nuclear ribonucleoprotein M
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000099783 HNRNPM 9606 + 19:8444767-8489114 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000325495 HNRNPM-002 8444958-8489114 protein_coding
  ENST00000348943 HNRNPM-001 8444767-8489114 protein_coding
  ENST00000593293 HNRNPM-014 8461969-8465372 retained_intron
  ENST00000594907 HNRNPM-017 8444992-8485724 protein_coding
  ENST00000596295 HNRNPM-012 8485862-8488946 protein_coding
  ENST00000596984 HNRNPM-010 8444993-8467582 protein_coding
  ENST00000597081 HNRNPM-016 8481469-8487082 processed_transcript
  ENST00000597270 HNRNPM-007 8466249-8486273 protein_coding
  ENST00000597813 HNRNPM-013 8444920-8463852 retained_intron
  ENST00000598367 HNRNPM-008 8463497-8474244 protein_coding
  ENST00000598603 HNRNPM-011 8482549-8485723 retained_intron
  ENST00000598999 HNRNPM-015 8486158-8487184 protein_coding
  ENST00000600092 HNRNPM-003 8444971-8485648 protein_coding
  ENST00000600806 HNRNPM-004 8444977-8489110 nonsense_mediated_decay
  ENST00000601645 HNRNPM-009 8444994-8471410 protein_coding
  ENST00000602219 HNRNPM-006 8487302-8489110 processed_transcript
  ENST00000620401 HNRNPM-201 8444990-8489110 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000325495ENST00000348943ENST00000594907ENST00000600092ENST00000600806
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000325495 39.749±0.00 64.489±0.00 3.112±0.00 23.180±20.29 24.903±18.01 21.707±15.37 14.411±13.60 28.722±22.68 9.524±2.12 20.488±14.54 14.810±0.00 56.451±34.07 54.716±19.83 56.068±4.58
ENST00000348943 34.645±0.00 37.410±0.00 N/A 20.382±0.00 20.362±0.00 27.558±0.00 13.919±0.00 32.055±0.00 N/A N/A 16.228±0.00 47.145±15.05 27.811±6.34 46.874±0.00
ENST00000594907 N/A N/A 3.887±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000600092 N/A N/A 3.162±0.00 2.956±0.00 N/A 4.099±0.00 1.865±0.00 N/A 7.310±0.00 7.220±0.00 N/A N/A N/A N/A
ENST00000600806 N/A N/A N/A 1.864±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002NQ CIL_0002NQ_0001 CGP 19:7926718-8445041
CIL_0000UT CIL_0000UT_0001 CGP 19:7958579-8445041
CIL_0005GY CIL_0005GY_0002 CGP 19:8413270-8489114

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000380 IMP alternative mRNA splicing, via spliceosome
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003723 NAS RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0005681 IDA spliceosomal complex
GO:0005887 TAS integral component of plasma membrane
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016363 IDA nuclear matrix
GO:0019904 IPI protein domain specific binding
GO:0031012 IDA extracellular matrix
GO:0042382 IDA paraspeckles
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061735 hnrnpm heterogeneous nuclear ribonucleoprotein M protein_coding Danio_rerio
ENSMUSG00000059208 Hnrnpm heterogeneous nuclear ribonucleoprotein M protein_coding Mus_musculus

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