C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: armadillo repeat gene deleted in velocardiofacial syndrome
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000099889 ARVCF 9606 - 22:19969896-20016808 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000263207 ARVCF-001 19969896-20016808 protein_coding
  ENST00000401994 ARVCF-011 19971228-19987093 protein_coding
  ENST00000406259 ARVCF-013 19971228-19990794 protein_coding
  ENST00000406522 ARVCF-012 19971228-19987093 protein_coding
  ENST00000462319 ARVCF-007 19981545-19983753 processed_transcript
  ENST00000467828 ARVCF-004 19981991-20016745 processed_transcript
  ENST00000473551 ARVCF-003 19979997-19990792 retained_intron
  ENST00000480792 ARVCF-009 19973162-19975762 processed_transcript
  ENST00000487793 ARVCF-005 19981152-19987190 processed_transcript
  ENST00000492625 ARVCF-006 19981382-19987155 processed_transcript
  ENST00000495096 ARVCF-002 19969898-19979416 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleOvaryTestisENST00000263207ENST00000406522ENST00000495096
Transcript ID Muscle Ovary Testis
ENST00000263207 N/A N/A 4.011±0.00
ENST00000406522 N/A N/A 6.333±0.00
ENST00000495096 1.609±0.00 18.404±0.00 5.695±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008BW CIL_0008BW_0001 VISTA 22:19453681-20054184
CIL_00099J CIL_00099J_0001 VISTA 22:19461833-20062532
CIL_00095F CIL_00095F_0001 VISTA 22:19497462-20100487
CIL_0006HK CIL_0006HK_0002 CGP 22:19969896-20065926

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005488 IEA binding
GO:0005515 IPI:IEA protein binding
GO:0005622 TAS intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0007155 TAS cell adhesion
GO:0007275 IEA multicellular organismal development
GO:0016337 IEA single organismal cell-cell adhesion
GO:0016339 IEA calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061688 arvcfb armadillo repeat gene deleted in velocardiofacial syndrome b protein_coding Danio_rerio
ENSDARG00000074329 arvcfa armadillo repeat gene deleted in velocardiofacial syndrome a protein_coding Danio_rerio
ENSMUSG00000000325 Arvcf armadillo repeat gene deleted in velo-cardio-facial syndrome protein_coding Mus_musculus

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