C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cat eye syndrome chromosome region, candidate 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000342247 CECR2-202 ENSG00000099954 9606 + 22:17369366-17554145 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeENST00000342247
Transcript ID Adipose
ENST00000342247 0.067±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002E1 CIL_0002E1_0001 CGP 22:17359949-17590994

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000910 NAS cytokinesis
GO:0001842 IEA neural fold formation
GO:0001843 IEA neural tube closure
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005719 IEA nuclear euchromatin
GO:0006309 TAS apoptotic DNA fragmentation
GO:0007010 NAS cytoskeleton organization
GO:0007338 IEA single fertilization
GO:0016192 NAS vesicle-mediated transport
GO:0021915 IEA neural tube development
GO:0031010 IEA ISWI-type complex
GO:0043044 IDA ATP-dependent chromatin remodeling
GO:0060122 IEA inner ear receptor stereocilium organization
GO:0090102 IEA cochlea development
GO:0090537 IDA CERF complex
GO:0097194 IDA execution phase of apoptosis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000100993 Cecr2-002 protein_coding Mus_musculus 0 1775
ENSMUST00000112686 Cecr2-001 protein_coding Mus_musculus 0 1775
ENSMUST00000143563 Cecr2-007 protein_coding Mus_musculus 0 756
ENSMUST00000124634 Cecr2-006 processed_transcript Mus_musculus 0 625
ENSMUST00000148346 Cecr2-003 retained_intron Mus_musculus 0 372
ENSMUST00000135109 Cecr2-004 processed_transcript Mus_musculus 0 370
ENSMUST00000129803 Cecr2-005 protein_coding Mus_musculus 0 364

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