C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: DNA meiotic recombinase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100206 DMC1 9606 - 22:38518949-38570286 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000216024 DMC1-001 38518949-38570286 protein_coding
  ENST00000415483 DMC1-003 38552671-38568409 protein_coding
  ENST00000428462 DMC1-201 38518949-38568409 protein_coding
  ENST00000439567 DMC1-005 38538295-38570131 protein_coding
  ENST00000464842 DMC1-004 38569284-38570204 processed_transcript
  ENST00000478820 DMC1-002 38549498-38570184 retained_intron
  ENST00000616615 DMC1-202 38545768-38570184 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000216024ENST00000415483ENST00000428462ENST00000439567ENST00000464842ENST00000616615
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000216024 N/A N/A N/A 0.222±0.00 N/A 0.282±0.00 0.066±0.00 N/A N/A 0.059±0.00 N/A 0.169±0.00 0.228±0.01 3.350±2.47
ENST00000415483 N/A N/A N/A N/A 0.177±0.00 0.358±0.00 N/A N/A N/A 0.516±0.00 N/A N/A 0.630±0.00 8.015±0.00
ENST00000428462 0.211±0.00 0.102±0.00 0.021±0.00 N/A 0.060±0.04 N/A N/A 0.033±0.00 0.034±0.03 N/A 0.142±0.00 0.108±0.02 0.063±0.00 N/A
ENST00000439567 N/A N/A N/A 0.332±0.00 0.128±0.00 N/A N/A N/A 0.128±0.00 0.256±0.00 N/A 0.081±0.03 N/A 4.738±0.00
ENST00000464842 N/A N/A N/A N/A N/A N/A N/A 0.452±0.00 N/A 1.114±0.00 N/A 0.766±0.00 0.461±0.00 N/A
ENST00000616615 0.254±0.00 0.510±0.00 N/A 0.253±0.00 0.265±0.00 N/A 0.141±0.00 0.193±0.00 0.018±0.00 0.138±0.00 0.070±0.00 0.067±0.05 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005DK CIL_0005DK_0001 CGP 22:38483440-38570286
CIL_0005DL CIL_0005DL_0001 CGP 22:38518949-38656629

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000781 IEA chromosome, telomeric region
GO:0000794 IEA condensed nuclear chromosome
GO:0001541 IEA ovarian follicle development
GO:0001556 IEA oocyte maturation
GO:0003677 IEA DNA binding
GO:0003697 IEA single-stranded DNA binding
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA:IEA nucleus
GO:0005694 ISS chromosome
GO:0006200 IEA ATP catabolic process
GO:0006259 IEA DNA metabolic process
GO:0006281 IEA DNA repair
GO:0007126 TAS meiotic nuclear division
GO:0007129 IEA synapsis
GO:0007131 IEA reciprocal meiotic recombination
GO:0007141 IEA male meiosis I
GO:0007276 IEA gamete generation
GO:0007283 TAS spermatogenesis
GO:0007286 IEA spermatid development
GO:0007292 TAS female gamete generation
GO:0008094 IEA DNA-dependent ATPase activity
GO:0009432 IEA SOS response

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000055883 dmc1 DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination (yeast) protein_coding Danio_rerio
ENSMUSG00000022429 Dmc1 DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination protein_coding Mus_musculus

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