C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: thioredoxin 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100348 TXN2 9606 - 22:36467036-36482030 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000216185 TXN2-001 36467036-36482030 protein_coding
  ENST00000403313 TXN2-005 36467591-36481340 protein_coding
  ENST00000411915 TXN2-003 36467884-36481596 nonsense_mediated_decay
  ENST00000416967 TXN2-002 36467046-36481634 protein_coding
  ENST00000487725 TXN2-004 36467549-36481632 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000216185ENST00000403313ENST00000416967ENST00000487725
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000216185 3.384±0.00 3.953±0.00 0.815±0.00 3.708±2.13 5.046±0.00 2.343±1.37 3.943±2.72 5.676±2.96 3.866±3.65 2.265±1.96 5.404±0.00 13.913±0.00 N/A 6.913±0.00
ENST00000403313 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.811±0.00 N/A 5.284±0.00
ENST00000416967 20.886±0.00 28.263±0.00 3.683±0.00 17.108±12.55 17.376±15.73 26.253±0.00 17.631±16.73 18.254±12.30 44.062±0.00 9.902±8.33 22.007±9.76 27.964±20.07 56.204±18.64 22.421±9.81
ENST00000487725 10.212±0.00 N/A N/A N/A 12.587±0.00 N/A N/A 27.017±0.00 N/A N/A N/A 12.337±9.11 20.723±0.00 11.109±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006EZ CIL_0006EZ_0002 CGP 22:36281281-36482030
CIL_0001W0 CIL_0001W0_0001 CGP 22:36467036-36507101

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001666 IEA response to hypoxia
GO:0005515 IEA protein binding
GO:0005730 IDA nucleolus
GO:0005739 IDA mitochondrion
GO:0005759 TAS mitochondrial matrix
GO:0006662 IEA glycerol ether metabolic process
GO:0006979 IEA response to oxidative stress
GO:0007584 IEA response to nutrient
GO:0008113 IEA peptide-methionine (S)-S-oxide reductase activity
GO:0009725 IEA response to hormone
GO:0009749 IEA response to glucose
GO:0014070 IEA response to organic cyclic compound
GO:0015035 IEA protein disulfide oxidoreductase activity
GO:0030425 IEA dendrite
GO:0031669 IEA cellular response to nutrient levels
GO:0032403 IEA protein complex binding
GO:0033743 IEA peptide-methionine (R)-S-oxide reductase activity
GO:0042493 IEA response to drug
GO:0043025 IEA neuronal cell body
GO:0045454 IEA cell redox homeostasis
GO:0048678 IEA response to axon injury
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000034777 txn2 thioredoxin 2 protein_coding Danio_rerio
ENSMUSG00000005354 Txn2 thioredoxin 2 protein_coding Mus_musculus

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