C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006EZ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000001014-ENSDARG00000034777 CGP 7955 3:5725973-5875229
GeneTranscriptPositionBiotype
ENSDARG00000001014 (myh9b)
myosin, heavy polypeptide 9b, non-muscle 		ENSDART00000092373 (myh9b-201) 5725974-5792166 protein_coding
ENSDART00000137105 (myh9b-001) 5725973-5826325 protein_coding
ENSDARG00000034777 (txn2)
thioredoxin 2 		ENSDART00000046995 (txn2-001) 5863289-5875229 protein_coding
ENSDART00000098927 (txn2-201) 5863290-5875184 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0006EZ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000100345-ENSG00000100348 CGP 9606 22:36281281-36482030
GeneTranscriptPositionBiotype
ENSG00000100345 (MYH9)
myosin, heavy chain 9, non-muscle 		ENST00000216181 (MYH9-001) 36281281-36388018 protein_coding
ENST00000401701 (MYH9-002) 36325033-36365112 protein_coding
ENST00000456729 (MYH9-015) 36348928-36365111 protein_coding
ENST00000459960 (MYH9-009) 36295512-36297323 retained_intron
ENST00000463027 (MYH9-003) 36320274-36328952 processed_transcript
ENST00000472210 (MYH9-005) 36320241-36321922 processed_transcript
ENST00000473022 (MYH9-007) 36302308-36304025 retained_intron
ENST00000475726 (MYH9-010) 36284162-36286044 processed_transcript
ENST00000477189 (MYH9-006) 36316513-36319835 retained_intron
ENST00000486218 (MYH9-011) 36284214-36286021 retained_intron
ENST00000495928 (MYH9-008) 36300910-36301714 processed_transcript
ENSG00000100348 (TXN2)
thioredoxin 2 		ENST00000216185 (TXN2-001) 36467036-36482030 protein_coding
ENST00000403313 (TXN2-005) 36467591-36481340 protein_coding
ENST00000411915 (TXN2-003) 36467884-36481596 nonsense_mediated_decay
ENST00000416967 (TXN2-002) 36467046-36481634 protein_coding
ENST00000487725 (TXN2-004) 36467549-36481632 processed_transcript
ENSG00000223695 (RP4-633O19__A.1)
 ENST00000424761 (RP4-633O19__A.1-001) 36388626-36396517 lincRNA
ENSG00000228719 (RP5-1119A7.14)
 ENST00000442579 (RP5-1119A7.14-001) 36445395-36454944 lincRNA
ENSG00000237668 (RPS15AP38)
ribosomal protein S15a pseudogene 38 		ENST00000413110 (RPS15AP38-001) 36421273-36421644 processed_pseudogene
ENSG00000278420 (MIR6819)
microRNA 6819 		ENST00000622122 (MIR6819-201) 36286847-36286907 miRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0006EZ_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000022443-ENSMUSG00000005354 CGP 10090 15:77760587-77929006
GeneTranscriptPositionBiotype
ENSMUSG00000005354 (Txn2)
thioredoxin 2 		ENSMUST00000005487 (Txn2-001) 77915047-77929006 protein_coding
ENSMUST00000100486 (Txn2-002) 77926398-77928997 protein_coding
ENSMUST00000109747 (Txn2-003) 77923220-77928974 protein_coding
ENSMUST00000109748 (Txn2-004) 77915210-77928968 protein_coding
ENSMUST00000173561 (Txn2-007) 77915047-77915700 processed_transcript
ENSMUST00000173631 (Txn2-008) 77915047-77927845 protein_coding
ENSMUST00000174468 (Txn2-006) 77915204-77927728 protein_coding
ENSMUST00000174529 (Txn2-005) 77919534-77927735 protein_coding
ENSMUSG00000022443 (Myh9)
myosin, heavy polypeptide 9, non-muscle 		ENSMUST00000016771 (Myh9-001) 77760587-77842175 protein_coding
ENSMUST00000123101 (Myh9-006) 77790741-77842047 nonsense_mediated_decay
ENSMUST00000124844 (Myh9-005) 77794652-77813231 processed_transcript
ENSMUST00000126796 (Myh9-004) 77788191-77842056 retained_intron
ENSMUST00000129453 (Myh9-002) 77790225-77842105 retained_intron
ENSMUST00000134878 (Myh9-003) 77805546-77842105 retained_intron
ENSMUST00000139729 (Myh9-007) 77765328-77767190 retained_intron
ENSMUSG00000084497 (Gm22107)
predicted gene, 22107 		ENSMUST00000122548 (Gm22107-201) 77840657-77840756 snRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006EZ_0001ENSDARG00000001014ENSDART00000092373ENSDART00000137105ENSDARG00000034777ENSDART00000046995ENSDART00000098927CIL_0006EZ_0002ENSG00000100345ENST00000216181ENST00000401701ENST00000456729ENST00000459960ENST00000463027ENST00000472210ENST00000473022ENST00000475726ENST00000477189ENST00000486218ENST00000495928ENSG00000100348ENST00000216185ENST00000403313ENST00000411915ENST00000416967ENST00000487725ENSG00000223695ENST00000424761ENSG00000228719ENST00000442579ENSG00000237668ENST00000413110ENSG00000278420ENST00000622122CIL_0006EZ_0003ENSMUSG00000005354ENSMUST00000005487ENSMUST00000100486ENSMUST00000109747ENSMUST00000109748ENSMUST00000173561ENSMUST00000173631ENSMUST00000174468ENSMUST00000174529ENSMUSG00000022443ENSMUST00000016771ENSMUST00000123101ENSMUST00000124844ENSMUST00000126796ENSMUST00000129453ENSMUST00000134878ENSMUST00000139729ENSMUSG00000084497ENSMUST00000122548
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006EZ_0001ENSDARG00000001014ENSDART00000092373ENSDART00000137105ENSDARG00000034777ENSDART00000046995ENSDART00000098927CIL_0006EZ_0002ENSG00000100345ENST00000216181ENST00000475726ENSG00000100348ENST00000216185ENST00000403313ENST00000416967ENST00000487725ENSG00000223695ENST00000424761ENSG00000228719ENST00000442579ENSG00000237668ENST00000413110ENSG00000278420ENST00000622122CIL_0006EZ_0003ENSMUSG00000005354ENSMUST00000005487ENSMUST00000100486ENSMUST00000173631ENSMUSG00000022443ENSMUST00000016771ENSMUST00000124844ENSMUSG00000084497ENSMUST00000122548
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000001014 ENSDART00000092373 N/A N/A N/A 0.045±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000137105 N/A N/A N/A 6.028±0.00 N/A N/A 24.782±0.00 N/A 3.546±0.00 N/A 24.628±0.00 N/A N/A N/A
ENSDARG00000034777 ENSDART00000046995 N/A N/A N/A 6.345±4.82 N/A N/A 15.614±4.33 9.762±0.00 1.993±0.00 N/A N/A N/A N/A N/A
ENSDART00000098927 N/A N/A N/A 8.650±8.58 N/A N/A 38.477±32.62 14.538±11.45 4.936±0.00 N/A 36.513±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000100345 ENST00000216181 236.287±0.00 150.748±0.00 16.081±0.00 21.320±20.10 81.838±51.65 70.697±49.54 23.752±21.47 43.367±34.31 17.012±6.73 187.064±169.04 21.801±15.56 65.410±55.06 99.490±5.46 54.058±51.31
ENST00000401701 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000456729 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000459960 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463027 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472210 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473022 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475726 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 226.158±0.00 198.757±0.00 28.673±0.00
ENST00000477189 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486218 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495928 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000100348 ENST00000216185 3.384±0.00 3.953±0.00 0.815±0.00 3.708±2.13 5.046±0.00 2.343±1.37 3.943±2.72 5.676±2.96 3.866±3.65 2.265±1.96 5.404±0.00 13.913±0.00 N/A 6.913±0.00
ENST00000403313 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.811±0.00 N/A 5.284±0.00
ENST00000411915 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000416967 20.886±0.00 28.263±0.00 3.683±0.00 17.108±12.55 17.376±15.73 26.253±0.00 17.631±16.73 18.254±12.30 44.062±0.00 9.902±8.33 22.007±9.76 27.964±20.07 56.204±18.64 22.421±9.81
ENST00000487725 10.212±0.00 N/A N/A N/A 12.587±0.00 N/A N/A 27.017±0.00 N/A N/A N/A 12.337±9.11 20.723±0.00 11.109±0.00
ENSG00000223695 ENST00000424761 N/A 0.182±0.00 N/A 0.041±0.00 0.231±0.00 0.278±0.00 0.182±0.03 N/A 0.148±0.00 0.322±0.00 N/A 0.264±0.17 N/A 0.148±0.02
ENSG00000228719 ENST00000442579 N/A 0.070±0.00 N/A N/A 0.153±0.00 N/A N/A N/A N/A N/A N/A 0.140±0.00 0.166±0.00 0.704±0.00
ENSG00000237668 ENST00000413110 N/A N/A N/A 0.086±0.00 0.245±0.16 0.115±0.00 N/A N/A N/A 0.673±0.00 0.072±0.00 0.369±0.05 0.167±0.00 0.075±0.00
ENSG00000278420 ENST00000622122 N/A 2.583±0.00 N/A N/A 0.905±0.00 N/A N/A N/A N/A 2.798±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000005354 ENSMUST00000005487 99.926±7.74 485.364±30.73 66.422±1.71 47.884±15.47 115.528±38.48 153.198±13.58 132.610±22.29 158.046±9.51 154.841±47.38 66.918±1.73 98.827±6.32 90.999±29.74 56.499±20.86 49.840±22.55
ENSMUST00000100486 N/A 221.003±30.86 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000109747 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000109748 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173561 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173631 N/A N/A N/A 178.612±0.00 N/A N/A N/A N/A N/A N/A 25.146±0.00 97.876±70.98 106.549±90.94 139.045±0.00
ENSMUST00000174468 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174529 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000022443 ENSMUST00000016771 44.235±0.96 29.435±3.52 48.083±1.54 14.232±10.27 43.725±19.43 60.608±5.72 13.586±0.94 30.037±2.23 15.367±4.58 80.104±1.22 7.439±0.97 56.017±31.66 174.191±108.02 2.711±0.79
ENSMUST00000123101 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000124844 N/A N/A N/A N/A 52.596±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126796 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129453 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134878 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139729 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000084497 ENSMUST00000122548 N/A N/A N/A N/A 6689.390±0.00 N/A 2415.355±100.09 N/A 159.646±58.82 2962.950±0.00 N/A N/A 103.354±0.00 N/A

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