C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: thioredoxin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000216185 TXN2-001 ENSG00000100348 9606 - 22:36467036-36482030 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000216185
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000216185 3.384±0.00 3.953±0.00 0.815±0.00 3.708±2.13 5.046±0.00 2.343±1.37 3.943±2.72 5.676±2.96 3.866±3.65 2.265±1.96 5.404±0.00 13.913±0.00 6.913±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006EZ CIL_0006EZ_0002 CGP 22:36281281-36482030
CIL_0001W0 CIL_0001W0_0001 CGP 22:36467036-36507101

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001666 IEA response to hypoxia
GO:0005515 IEA protein binding
GO:0005730 IDA nucleolus
GO:0005739 IDA mitochondrion
GO:0005759 TAS mitochondrial matrix
GO:0006662 IEA glycerol ether metabolic process
GO:0006979 IEA response to oxidative stress
GO:0007584 IEA response to nutrient
GO:0008113 IEA peptide-methionine (S)-S-oxide reductase activity
GO:0009725 IEA response to hormone
GO:0009749 IEA response to glucose
GO:0014070 IEA response to organic cyclic compound
GO:0015035 IEA protein disulfide oxidoreductase activity
GO:0030425 IEA dendrite
GO:0031669 IEA cellular response to nutrient levels
GO:0032403 IEA protein complex binding
GO:0033743 IEA peptide-methionine (R)-S-oxide reductase activity
GO:0042493 IEA response to drug
GO:0043025 IEA neuronal cell body
GO:0045454 IEA cell redox homeostasis
GO:0048678 IEA response to axon injury
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000005487 Txn2-001 protein_coding Mus_musculus 0 645
ENSMUST00000109748 Txn2-004 protein_coding Mus_musculus 0 566
ENSMUST00000173631 Txn2-008 protein_coding Mus_musculus 0 472

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