C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100416 TRMU 9606 + 22:46330875-46357340 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000290846 TRMU-001 46335425-46357340 protein_coding
  ENST00000381019 TRMU-007 46335745-46357184 protein_coding
  ENST00000381021 TRMU-004 46335425-46357337 nonsense_mediated_decay
  ENST00000441818 TRMU-002 46335401-46357335 nonsense_mediated_decay
  ENST00000453630 TRMU-005 46335425-46357337 nonsense_mediated_decay
  ENST00000456595 TRMU-003 46335425-46357337 nonsense_mediated_decay
  ENST00000457572 TRMU-006 46335425-46357337 nonsense_mediated_decay
  ENST00000463785 TRMU-016 46350345-46352841 processed_transcript
  ENST00000465378 TRMU-012 46335893-46346544 processed_transcript
  ENST00000470831 TRMU-010 46354710-46357338 retained_intron
  ENST00000476901 TRMU-018 46330875-46333699 processed_transcript
  ENST00000479648 TRMU-017 46351650-46352312 retained_intron
  ENST00000485175 TRMU-014 46335958-46352329 processed_transcript
  ENST00000485559 TRMU-009 46353517-46357339 retained_intron
  ENST00000486620 TRMU-011 46331447-46352330 processed_transcript
  ENST00000491612 TRMU-008 46352829-46357337 retained_intron
  ENST00000493556 TRMU-015 46336390-46337933 processed_transcript
  ENST00000496831 TRMU-013 46335895-46350420 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000290846ENST00000381019ENST00000381021ENST00000441818ENST00000453630ENST00000456595ENST00000457572ENST00000463785ENST00000470831ENST00000476901ENST00000485175ENST00000485559ENST00000491612ENST00000493556
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000290846 N/A N/A N/A 3.209±0.00 N/A 2.822±0.00 3.825±0.00 1.167±0.09 2.370±0.00 0.535±0.00 N/A 2.292±0.50 2.240±0.00
ENST00000381019 1.071±0.00 3.843±0.00 3.155±1.95 N/A 1.911±0.00 6.546±0.00 1.337±0.73 N/A 1.072±0.00 N/A 5.820±4.03 2.387±0.55 2.787±0.71
ENST00000381021 0.863±0.00 N/A N/A 2.894±0.00 3.734±0.00 N/A N/A 3.008±0.00 1.109±0.00 N/A N/A 2.383±0.64 N/A
ENST00000441818 N/A N/A N/A N/A N/A N/A N/A 0.651±0.00 1.128±0.00 N/A N/A N/A 1.637±0.00
ENST00000453630 N/A N/A 0.866±0.00 N/A N/A N/A N/A 0.324±0.00 N/A N/A 2.350±0.00 N/A N/A
ENST00000456595 N/A N/A N/A 1.134±0.00 N/A N/A N/A N/A N/A 0.939±0.00 N/A N/A N/A
ENST00000457572 N/A N/A N/A 0.453±0.00 1.106±0.00 0.874±0.00 0.672±0.00 N/A N/A N/A 1.713±0.36 N/A 1.332±0.00
ENST00000463785 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.914±0.00 N/A N/A N/A
ENST00000470831 N/A 2.938±0.00 0.556±0.00 N/A N/A N/A N/A N/A N/A N/A 6.056±0.00 N/A N/A
ENST00000476901 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.772±0.39 N/A
ENST00000485175 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.949±0.00 3.975±0.00
ENST00000485559 N/A 2.298±0.00 N/A N/A 0.869±0.00 0.209±0.00 1.934±0.00 N/A N/A N/A 2.043±1.64 N/A N/A
ENST00000491612 0.411±0.00 N/A 2.029±0.00 N/A 1.806±0.00 N/A 1.907±0.00 N/A 1.179±0.00 N/A 3.196±1.70 N/A 1.000±0.00
ENST00000493556 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.687±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00024F CIL_00024F_0001 CGP 22:46296741-46357340
CIL_00024N CIL_00024N_0001 CGP 22:46330875-46537170

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000049 IEA tRNA binding
GO:0004066 IEA asparagine synthase (glutamine-hydrolyzing) activity
GO:0004810 IEA tRNA adenylyltransferase activity
GO:0005524 IEA ATP binding
GO:0005737 IEA cytoplasm
GO:0005739 ISS mitochondrion
GO:0006529 IEA asparagine biosynthetic process
GO:0008033 IEA tRNA processing
GO:0008168 IEA methyltransferase activity
GO:0016740 IEA transferase activity
GO:0016783 IEA sulfurtransferase activity
GO:0032259 IEA methylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043734 trmu tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase protein_coding Danio_rerio
ENSMUSG00000022386 Trmu tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase protein_coding Mus_musculus

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