C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00024N_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000100416-ENSG00000075275 CGP 9606 22:46330875-46537170
GeneTranscriptPositionBiotype
ENSG00000075275 (CELSR1)
cadherin, EGF LAG seven-pass G-type receptor 1 		ENST00000262738 (CELSR1-001) 46360834-46537170 protein_coding
ENST00000454637 (CELSR1-002) 46462780-46535294 protein_coding
ENST00000468025 (CELSR1-005) 46372913-46377624 processed_transcript
ENST00000473624 (CELSR1-003) 46361174-46365380 retained_intron
ENST00000497509 (CELSR1-004) 46530308-46534200 processed_transcript
ENSG00000100416 (TRMU)
tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase 		ENST00000290846 (TRMU-001) 46335425-46357340 protein_coding
ENST00000381019 (TRMU-007) 46335745-46357184 protein_coding
ENST00000381021 (TRMU-004) 46335425-46357337 nonsense_mediated_decay
ENST00000441818 (TRMU-002) 46335401-46357335 nonsense_mediated_decay
ENST00000453630 (TRMU-005) 46335425-46357337 nonsense_mediated_decay
ENST00000456595 (TRMU-003) 46335425-46357337 nonsense_mediated_decay
ENST00000457572 (TRMU-006) 46335425-46357337 nonsense_mediated_decay
ENST00000463785 (TRMU-016) 46350345-46352841 processed_transcript
ENST00000465378 (TRMU-012) 46335893-46346544 processed_transcript
ENST00000470831 (TRMU-010) 46354710-46357338 retained_intron
ENST00000476901 (TRMU-018) 46330875-46333699 processed_transcript
ENST00000479648 (TRMU-017) 46351650-46352312 retained_intron
ENST00000485175 (TRMU-014) 46335958-46352329 processed_transcript
ENST00000485559 (TRMU-009) 46353517-46357339 retained_intron
ENST00000486620 (TRMU-011) 46331447-46352330 processed_transcript
ENST00000491612 (TRMU-008) 46352829-46357337 retained_intron
ENST00000493556 (TRMU-015) 46336390-46337933 processed_transcript
ENST00000496831 (TRMU-013) 46335895-46350420 processed_transcript
ENSG00000230634 (RP5-996D20.3)
 ENST00000447383 (RP5-996D20.3-001) 46481329-46481760 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_00024N_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000022386-ENSMUSG00000016028 CGP 10090 15:85879312-86033777
GeneTranscriptPositionBiotype
ENSMUSG00000016028 (Celsr1)
cadherin, EGF LAG seven-pass G-type receptor 1 (flamingo homolog, Drosophila) 		ENSMUST00000016172 (Celsr1-201) 85898758-86033777 protein_coding
ENSMUSG00000022386 (Trmu)
tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase 		ENSMUST00000023019 (Trmu-001) 85879320-85897392 protein_coding
ENSMUST00000159362 (Trmu-008) 85894751-85897059 retained_intron
ENSMUST00000159730 (Trmu-003) 85894881-85897394 retained_intron
ENSMUST00000160733 (Trmu-005) 85879381-85882843 nonsense_mediated_decay
ENSMUST00000161784 (Trmu-009) 85892577-85894476 retained_intron
ENSMUST00000162010 (Trmu-002) 85894207-85897392 processed_transcript
ENSMUST00000162339 (Trmu-006) 85885164-85896426 nonsense_mediated_decay
ENSMUST00000162491 (Trmu-004) 85879312-85892598 nonsense_mediated_decay
ENSMUST00000162601 (Trmu-007) 85879414-85893954 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00024N_0001ENSG00000075275ENST00000262738ENST00000454637ENST00000468025ENST00000473624ENST00000497509ENSG00000100416ENST00000290846ENST00000381019ENST00000381021ENST00000441818ENST00000453630ENST00000456595ENST00000457572ENST00000463785ENST00000465378ENST00000470831ENST00000476901ENST00000479648ENST00000485175ENST00000485559ENST00000486620ENST00000491612ENST00000493556ENST00000496831ENSG00000230634ENST00000447383CIL_00024N_0002ENSMUSG00000016028ENSMUST00000016172ENSMUSG00000022386ENSMUST00000023019ENSMUST00000159362ENSMUST00000159730ENSMUST00000160733ENSMUST00000161784ENSMUST00000162010ENSMUST00000162339ENSMUST00000162491ENSMUST00000162601
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00024N_0001ENSG00000075275ENST00000262738ENST00000454637ENST00000473624ENSG00000100416ENST00000290846ENST00000381019ENST00000381021ENST00000441818ENST00000453630ENST00000456595ENST00000457572ENST00000463785ENST00000470831ENST00000476901ENST00000485175ENST00000485559ENST00000491612ENST00000493556ENSG00000230634ENST00000447383CIL_00024N_0002ENSMUSG00000016028ENSMUST00000016172ENSMUSG00000022386ENSMUST00000023019ENSMUST00000159362ENSMUST00000159730ENSMUST00000161784ENSMUST00000162010ENSMUST00000162491ENSMUST00000162601
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000075275 ENST00000262738 0.287±0.00 2.122±0.00 1.768±0.00 0.052±0.03 0.634±0.00 0.184±0.05 0.807±0.68 2.330±0.00 0.128±0.09 2.081±1.00 N/A 2.837±1.26 0.656±0.09 0.770±0.00
ENST00000454637 N/A N/A N/A N/A N/A 0.476±0.00 N/A N/A N/A N/A 0.039±0.00 N/A N/A N/A
ENST00000468025 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473624 N/A 2.979±0.00 N/A N/A 0.348±0.00 N/A N/A 1.783±0.00 N/A 3.862±0.00 0.005±0.00 1.976±0.39 0.337±0.00 N/A
ENST00000497509 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000100416 ENST00000290846 N/A N/A N/A N/A 3.209±0.00 N/A 2.822±0.00 3.825±0.00 1.167±0.09 2.370±0.00 0.535±0.00 N/A 2.292±0.50 2.240±0.00
ENST00000381019 1.071±0.00 3.843±0.00 N/A 3.155±1.95 N/A 1.911±0.00 6.546±0.00 1.337±0.73 N/A 1.072±0.00 N/A 5.820±4.03 2.387±0.55 2.787±0.71
ENST00000381021 0.863±0.00 N/A N/A N/A 2.894±0.00 3.734±0.00 N/A N/A 3.008±0.00 1.109±0.00 N/A N/A 2.383±0.64 N/A
ENST00000441818 N/A N/A N/A N/A N/A N/A N/A N/A 0.651±0.00 1.128±0.00 N/A N/A N/A 1.637±0.00
ENST00000453630 N/A N/A N/A 0.866±0.00 N/A N/A N/A N/A 0.324±0.00 N/A N/A 2.350±0.00 N/A N/A
ENST00000456595 N/A N/A N/A N/A 1.134±0.00 N/A N/A N/A N/A N/A 0.939±0.00 N/A N/A N/A
ENST00000457572 N/A N/A N/A N/A 0.453±0.00 1.106±0.00 0.874±0.00 0.672±0.00 N/A N/A N/A 1.713±0.36 N/A 1.332±0.00
ENST00000463785 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.914±0.00 N/A N/A N/A
ENST00000465378 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470831 N/A 2.938±0.00 N/A 0.556±0.00 N/A N/A N/A N/A N/A N/A N/A 6.056±0.00 N/A N/A
ENST00000476901 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.772±0.39 N/A
ENST00000479648 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485175 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.949±0.00 3.975±0.00
ENST00000485559 N/A 2.298±0.00 N/A N/A N/A 0.869±0.00 0.209±0.00 1.934±0.00 N/A N/A N/A 2.043±1.64 N/A N/A
ENST00000486620 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491612 0.411±0.00 N/A N/A 2.029±0.00 N/A 1.806±0.00 N/A 1.907±0.00 N/A 1.179±0.00 N/A 3.196±1.70 N/A 1.000±0.00
ENST00000493556 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.687±0.00 N/A N/A N/A
ENST00000496831 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000230634 ENST00000447383 N/A N/A N/A N/A N/A 0.044±0.00 N/A N/A N/A N/A N/A 0.070±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000016028 ENSMUST00000016172 1.675±1.12 0.291±0.10 0.355±0.07 3.517±1.88 1.702±0.93 8.424±0.32 0.751±0.09 1.568±0.50 0.073±0.01 4.359±0.18 0.057±0.07 6.710±1.62 0.782±0.52 0.064±0.04
ENSMUSG00000022386 ENSMUST00000023019 3.682±0.40 2.510±1.12 5.267±1.20 11.942±1.53 2.692±0.86 3.105±0.66 3.075±0.78 4.613±0.95 5.871±4.10 2.673±0.74 2.964±0.51 3.823±1.20 3.160±1.49 1.915±0.37
ENSMUST00000159362 2.446±0.00 2.482±0.46 N/A 3.668±0.00 3.033±0.46 N/A 1.617±0.00 N/A N/A 3.210±0.39 N/A 3.653±0.54 1.085±0.00 N/A
ENSMUST00000159730 N/A 1.030±0.24 1.839±0.00 1.835±0.00 0.883±0.00 1.151±0.27 0.759±0.00 N/A 0.574±0.05 1.113±0.12 0.393±0.00 1.752±0.27 N/A N/A
ENSMUST00000160733 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161784 N/A N/A N/A 4.289±0.00 N/A N/A N/A N/A N/A 3.100±0.00 1.186±0.00 4.087±1.33 N/A N/A
ENSMUST00000162010 4.661±0.68 1.559±0.38 3.539±0.00 5.390±0.00 4.186±0.59 3.722±1.40 4.166±0.95 5.573±1.45 3.886±1.06 3.442±0.41 2.827±0.00 5.831±1.50 4.083±0.31 3.336±0.74
ENSMUST00000162339 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162491 N/A 5.119±1.43 N/A N/A 7.040±0.33 N/A 5.542±1.47 8.000±0.43 4.075±0.49 11.126±0.96 N/A 11.050±3.98 11.303±0.40 7.223±0.00
ENSMUST00000162601 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.129±0.00 N/A N/A

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