C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000381021 TRMU-004 ENSG00000100416 9606 + 22:46335425-46357337 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonLiverLungPlacentaENST00000381021
Transcript ID Adipose Breast Colon Liver Lung Placenta
ENST00000381021 0.863±0.00 2.894±0.00 3.734±0.00 3.008±0.00 1.109±0.00 2.383±0.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00024F CIL_00024F_0001 CGP 22:46296741-46357340
CIL_00024N CIL_00024N_0001 CGP 22:46330875-46537170

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004066 IEA asparagine synthase (glutamine-hydrolyzing) activity
GO:0004810 IEA tRNA adenylyltransferase activity
GO:0005737 IEA cytoplasm
GO:0006529 IEA asparagine biosynthetic process
GO:0008033 IEA tRNA processing
GO:0008168 IEA methyltransferase activity
GO:0016740 IEA transferase activity
GO:0032259 IEA methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023019 Trmu-001 protein_coding Mus_musculus 0 939
ENSMUST00000162010 Trmu-002 processed_transcript Mus_musculus 0 503
ENSMUST00000162491 Trmu-004 nonsense_mediated_decay Mus_musculus 0 466
ENSMUST00000162601 Trmu-007 retained_intron Mus_musculus 0 388
ENSMUST00000159730 Trmu-003 retained_intron Mus_musculus 0 387
ENSMUST00000159362 Trmu-008 retained_intron Mus_musculus 0 292
ENSMUST00000161784 Trmu-009 retained_intron Mus_musculus 0 267
ENSMUST00000162339 Trmu-006 nonsense_mediated_decay Mus_musculus 0 193

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