C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022386 Trmu 10090 + 15:85879312-85897394 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000023019 Trmu-001 85879320-85897392 protein_coding
  ENSMUST00000159362 Trmu-008 85894751-85897059 retained_intron
  ENSMUST00000159730 Trmu-003 85894881-85897394 retained_intron
  ENSMUST00000160733 Trmu-005 85879381-85882843 nonsense_mediated_decay
  ENSMUST00000161784 Trmu-009 85892577-85894476 retained_intron
  ENSMUST00000162010 Trmu-002 85894207-85897392 processed_transcript
  ENSMUST00000162339 Trmu-006 85885164-85896426 nonsense_mediated_decay
  ENSMUST00000162491 Trmu-004 85879312-85892598 nonsense_mediated_decay
  ENSMUST00000162601 Trmu-007 85879414-85893954 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023019ENSMUST00000159362ENSMUST00000159730ENSMUST00000161784ENSMUST00000162010ENSMUST00000162491ENSMUST00000162601
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023019 3.682±0.40 2.510±1.12 5.267±1.20 11.942±1.53 2.692±0.86 3.105±0.66 3.075±0.78 4.613±0.95 5.871±4.10 2.673±0.74 2.964±0.51 3.823±1.20 3.160±1.49 1.915±0.37
ENSMUST00000159362 2.446±0.00 2.482±0.46 N/A 3.668±0.00 3.033±0.46 N/A 1.617±0.00 N/A N/A 3.210±0.39 N/A 3.653±0.54 1.085±0.00 N/A
ENSMUST00000159730 N/A 1.030±0.24 1.839±0.00 1.835±0.00 0.883±0.00 1.151±0.27 0.759±0.00 N/A 0.574±0.05 1.113±0.12 0.393±0.00 1.752±0.27 N/A N/A
ENSMUST00000161784 N/A N/A N/A 4.289±0.00 N/A N/A N/A N/A N/A 3.100±0.00 1.186±0.00 4.087±1.33 N/A N/A
ENSMUST00000162010 4.661±0.68 1.559±0.38 3.539±0.00 5.390±0.00 4.186±0.59 3.722±1.40 4.166±0.95 5.573±1.45 3.886±1.06 3.442±0.41 2.827±0.00 5.831±1.50 4.083±0.31 3.336±0.74
ENSMUST00000162491 N/A 5.119±1.43 N/A N/A 7.040±0.33 N/A 5.542±1.47 8.000±0.43 4.075±0.49 11.126±0.96 N/A 11.050±3.98 11.303±0.40 7.223±0.00
ENSMUST00000162601 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.129±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008BF CIL_0008BF_0002 VISTA 15:85812646-86415385
CIL_00024F CIL_00024F_0002 CGP 15:85859707-85897394
CIL_00024N CIL_00024N_0002 CGP 15:85879312-86033777

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000049 IEA tRNA binding
GO:0003674 ND molecular_function
GO:0005524 IEA ATP binding
GO:0005739 IDA mitochondrion
GO:0008033 IEA tRNA processing
GO:0008150 ND biological_process
GO:0016740 IEA transferase activity
GO:0016783 IEA sulfurtransferase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043734 trmu tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase protein_coding Danio_rerio
ENSG00000100416 TRMU tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase protein_coding Homo_sapiens

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